3300006257: Human stool microbial communities from NIH, USA - visit 2, subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 3300006257
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052780 | Ga0099346
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 101552093
• Sequencing Scaffolds: 8
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F044555	Metagenome / Metatranscriptome	154	N
F052660	Metagenome	142	N
F064817	Metagenome	128	N
F068941	Metagenome	124	N
F076190	Metagenome	118	Y
F080163	Metagenome	115	N
F099451	Metagenome	103	N
F101356	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105374	Metagenome	100	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099346_100045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	141953
Ga0099346_100244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	61192
Ga0099346_100763	All Organisms → cellular organisms → Bacteria	22250
Ga0099346_101095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus	14766
Ga0099346_104486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3223
Ga0099346_105768	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2434
Ga0099346_115409	Not Available	855
Ga0099346_120965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099346_100045	Ga0099346_10004516	F068941	VSLKEQYLDKGVERMDNKKFIIGVILLLLLMIGGTYAYYKWSSSDNMNVNVKIDGGTVTFDGGTNITSTIMPTATKEEGIKKDITVKASKEGVTMNLYMDLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGISYATSGVTTLTLFTGRDVSTSNTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
Ga0099346_100244	Ga0099346_10024446	F076190	VRTAGGSITISAKNVFTIASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYSYFQREPL*
Ga0099346_100763	Ga0099346_10076317	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKREYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0099346_100763	Ga0099346_10076319	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQNGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0099346_100763	Ga0099346_10076322	F101357	MNLNNITTALKTGITIYQYEQWQNIGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0099346_100763	Ga0099346_10076329	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHK*
Ga0099346_100763	Ga0099346_10076334	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLENINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREEICELIGINPNLEKQGHKDNYVFNLNIDSDNQIGLFLQATEL*
Ga0099346_100763	Ga0099346_10076335	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSYGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALNDGVEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0099346_101095	Ga0099346_10109513	F099451	MEIKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE*
Ga0099346_104486	Ga0099346_1044862	F013656	MSKTYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKVILKANIYDM*
Ga0099346_105403	Ga0099346_1054036	F101356	RNHFLIPKSILLKGSHRYQFSHVGFGDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0099346_105768	Ga0099346_1057683	F105374	MKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0099346_115409	Ga0099346_1154092	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0099346_120965	Ga0099346_1209651	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQEGLNRNVC*