3300006248: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023

Overview

Basic Information

• IMG/M Taxon OID: 3300006248
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052813 | Ga0099387
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74434349
• Sequencing Scaffolds: 7
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F063778	Metagenome	129	Y
F067846	Metagenome	125	Y
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F092231	Metagenome	107	Y
F101360	Metagenome	102	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099387_100003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	182519
Ga0099387_100020	All Organisms → cellular organisms → Bacteria	44503
Ga0099387_100609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	8140
Ga0099387_100745	All Organisms → Viruses	7488
Ga0099387_103111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	3423
Ga0099387_105733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica	2237
Ga0099387_117081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	983

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099387_100003	Ga0099387_100003100	F073671	MTNNKQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKEQK*
Ga0099387_100003	Ga0099387_10000394	F067846	MESLQAQWERKTFNDWDKQCGKEDDHNRAIEMEIEAIKEDIANGDDDAICLFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLKQLEEDYRKGFILND*
Ga0099387_100020	Ga0099387_10002010	F027205	VASRLIVSADDILKAVKESEEFERKALKEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0099387_100020	Ga0099387_10002013	F043991	VSKKNPSIIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099387_100020	Ga0099387_10002014	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDGFVVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0099387_100020	Ga0099387_10002015	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0099387_100020	Ga0099387_10002027	F081456	VFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0099387_100020	Ga0099387_1000208	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPKESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYHNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099387_100020	Ga0099387_1000209	F036281	MFSLIRVSEGPVDIHELRTRYLGKLKTEEGVMLPTFIYRNKGLFITEFKPTCNDQWIMYMTNAEGLIAKMRIKNGDLMSNGSVLFLAEERKTYTAKEYYDYWTAREGRPAPFFYEARQYHVKSFMRVPDSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0099387_100609	Ga0099387_10060911	F063778	MPETISEEAKQKLLQQLQDALGLVKSADTSAHDVAAITHSAADGHQLTEVMLQELTTAREYLKSCADQIEYAISSIEAIPLDPPPDD*
Ga0099387_100745	Ga0099387_1007456	F105377	VRDFDRLPLLTPEEASERAWEEGGPAHPVFDRGYRVQGLDAWKAIETLLQQNDVRDITVASFGLRRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYHGD*
Ga0099387_103111	Ga0099387_1031115	F063778	MPETISEGAKQQLLQQLQDALGLVKDADTSTRDVAAITHSAANGHQLTEVMLQQMTAARGYLKSCADQIEYAISSIKAIPLDPPPED*
Ga0099387_105733	Ga0099387_1057332	F092231	MIIFPPQEFITWTNKLMQFPWPIQVGDFAPYAEKLGWAPTSLPDEFSVCAGNNGGRVILGDDRSGNVRELFLSMARNETEDAEGAAELNDHFVACVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTRGRRTVMFNFFTPEGRRQFL*
Ga0099387_117081	Ga0099387_1170812	F101360	MAGTELRGRKGPVSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLECNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRTSTAQEEAIRELISTGDISILEIECGDA*