3300006245: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532

Overview

Basic Information

• IMG/M Taxon OID: 3300006245
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052799 | Ga0099369
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53629776
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051213	Metagenome	144	N
F061927	Metagenome	131	N
F071328	Metagenome	122	N
F077404	Metagenome	117	N
F078842	Metagenome	116	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F095633	Metagenome	105	N
F097527	Metagenome	104	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099369_100208	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10091
Ga0099369_100821	All Organisms → Viruses → Predicted Viral	4650
Ga0099369_101043	All Organisms → Viruses → Predicted Viral	4066
Ga0099369_101368	All Organisms → Viruses → Predicted Viral	3436
Ga0099369_103171	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1981
Ga0099369_104420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1597
Ga0099369_105413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1384
Ga0099369_106296	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1261
Ga0099369_111974	Not Available	848
Ga0099369_116995	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	688
Ga0099369_128199	All Organisms → cellular organisms → Bacteria	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099369_100208	Ga0099369_1002082	F051213	MKASKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK*
Ga0099369_100821	Ga0099369_1008213	F089057	MTNIIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKAFVIFDKILGMVVSQLLHTASSKEERIFGVFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM*
Ga0099369_101043	Ga0099369_1010434	F105379	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGIGPEKSYFQTTSYMVDLSPHINNLLVNIYDLKNFGKITQLEPSKDNPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIITRTDEFHNTDCYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIVVNQSMLFLPY*
Ga0099369_101368	Ga0099369_1013682	F099453	MNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLESFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEVERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSDVTYAFKNPAVIVMSKLEHMIGKKFKEFNSTDIEIVYVDRLKNYYKIPVCVNRIYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA*
Ga0099369_101368	Ga0099369_1013685	F080166	LANFENYNKVVEVIFELNYKLTLKMEVTFNGILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNSLLHTPAMARYMAMTPLLGSNRQNMMRS*
Ga0099369_101368	Ga0099369_1013686	F081455	DPDYAEYELESLNPVEEINAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEWILGNYVDYDSFNKIKESNADIIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKR*
Ga0099369_103171	Ga0099369_1031714	F095633	MRNYENSTEVGRREGLTEGELRAMGTLAMEATEELKKTTIRKETVLLGGIPFDSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
Ga0099369_104420	Ga0099369_1044202	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEVKKAYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVTLNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKNLSSYVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMINSIELDIYEVNS*
Ga0099369_105413	Ga0099369_1054131	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSILA
Ga0099369_106296	Ga0099369_1062961	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0099369_106607	Ga0099369_1066073	F103435	NQWNYMSQLINKLTYQYLIDSPEFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALDGKSTVEPLRVWYPFDMNSYTNALE*
Ga0099369_111974	Ga0099369_1119741	F071328	ILHEWHHRHLQGFICHVNKDYKMSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIAPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSFIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0099369_116995	Ga0099369_1169951	F077404	SINIAAGKSMLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRF
Ga0099369_128199	Ga0099369_1281992	F061927	NYIIMKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*