3300006244: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490

Overview

Basic Information

• IMG/M Taxon OID: 3300006244
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052793 | Ga0099354
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21672235
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F067847	Metagenome	125	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0099354_100013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	56676
Ga0099354_102305	All Organisms → Viruses → Predicted Viral	1709
Ga0099354_103158	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1256
Ga0099354_103312	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1205
Ga0099354_106915	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	608
Ga0099354_108053	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099354_100013	Ga0099354_1000131	F077405	LLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQK*
Ga0099354_102305	Ga0099354_1023052	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL*
Ga0099354_103158	Ga0099354_1031584	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTAVSFFVKLVITAIGFLFCAMTVILYTISAE*
Ga0099354_103312	Ga0099354_1033121	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTPVNRASNFVNKFISARGNSDLD
Ga0099354_106915	Ga0099354_1069151	F018385	GVLGLMAEFVNRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNSRILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK
Ga0099354_108053	Ga0099354_1080531	F027205	IMRAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK*