3300006234: Marine sediment microbial communities, 1.1 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC366

Overview

Basic Information

• IMG/M Taxon OID: 3300006234
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121739 | Ga0082394
• Sample Name: Marine sediment microbial communities, 1.1 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC366
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47250031
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F004498	Metagenome / Metatranscriptome	435	Y
F021791	Metagenome / Metatranscriptome	217	Y
F030135	Metagenome / Metatranscriptome	186	Y
F047147	Metagenome / Metatranscriptome	150	Y
F082867	Metagenome / Metatranscriptome	113	Y
F099485	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0082394_103999	Not Available	592
Ga0082394_129284	Not Available	627
Ga0082394_132460	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	561
Ga0082394_135782	Not Available	933
Ga0082394_145112	Not Available	752
Ga0082394_151328	All Organisms → cellular organisms → Archaea	869
Ga0082394_178741	Not Available	933
Ga0082394_178745	Not Available	933

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0082394_103999	Ga0082394_1039991	F047147	AVTEGPVREEQLLHDMCLLGAMTVEITQILTRAR*
Ga0082394_123267	Ga0082394_1232671	F000237	SNIYKTYYVIFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLVFIYF*SHHASAHTVNFFFFERWNIAELDEIRFYGVAPHWYFRPLMGILVISPTHYEGLM*LALFFLLLTFLPMIYNLYNNSNKHIPTIPMQNSLIQTFAFILFVLSLFCTASILPCGRYYYEPEGGYVGNP*IKFSLQYVYLYMAWFLHHLDLIDHYIFLFFQTFLKKINKFVMRNNKDYS*KRENFVFFFNRNYVF*
Ga0082394_129284	Ga0082394_1292841	F030135	RGPKNREELATLSSFTDIWHSTVVGCQFPDAILPGWEAFDLVAGPLS*
Ga0082394_132460	Ga0082394_1324601	F004498	MCAPAGCGFVPGLPECFDKKETVVQEVPEETCQLHPQKTCKYVTKLVPSLRPQEECVDVPKEVCQRSRINPRKVQKPVVKKWCYTPSPGSGLL*
Ga0082394_135782	Ga0082394_1357821	F021791	MLVRFVADYRIKPHVPPFIQIPANFVKFKSCEFTTQAEYLYVNY*
Ga0082394_145112	Ga0082394_1451121	F030135	DFSEGLKDREELATLSSITDIGHSAYAGRQFPDAILPGREAVDLVAGPLN*
Ga0082394_151328	Ga0082394_1513283	F099485	NWQHSPSKTQVARTPVKAVSKYLQQSQTLTHEDLMGLSWMLSEEGD*
Ga0082394_178741	Ga0082394_1787411	F082867	FVSSLSIPKERKMPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLPNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP*
Ga0082394_178745	Ga0082394_1787451	F082867	MPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLPNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP*