3300006230: Marine sediment microbial communities, 15.1 km from oil contamination, ambient, Gulf of Mexico ? BC155

Overview

Basic Information

• IMG/M Taxon OID: 3300006230
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121734 | Ga0082390
• Sample Name: Marine sediment microbial communities, 15.1 km from oil contamination, ambient, Gulf of Mexico ? BC155
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40049693
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F014988	Metagenome / Metatranscriptome	258	Y
F026908	Metagenome / Metatranscriptome	196	Y
F030134	Metagenome / Metatranscriptome	186	Y
F030135	Metagenome / Metatranscriptome	186	Y
F060086	Metagenome / Metatranscriptome	133	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0082390_114132	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	3379
Ga0082390_119674	Not Available	933
Ga0082390_120464	Not Available	755
Ga0082390_120468	Not Available	725
Ga0082390_120469	Not Available	529
Ga0082390_122784	Not Available	642
Ga0082390_125275	Not Available	898
Ga0082390_128012	Not Available	533
Ga0082390_141923	Not Available	724

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0082390_114132	Ga0082390_1141322	F014988	MSFSPTSPAVGAAITAFTSPTYTLATDVAPNINGKQYAVSALGGTQADVVVNSVSKPFTVTFFRPAQLRTLPQANPVTGVIKNVPMNTYKLITRKGAEPAANQNAIVAKITTVIDIPAGADTYEPEELKALLSCHFGIGWEQADGISDTVISGVL*
Ga0082390_117776	Ga0082390_1177761	F060086	LLLLANLFGEDRKRQLISVNDLETPLLGDMADLLRK*
Ga0082390_119674	Ga0082390_1196741	F082867	GSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDKEADTLVVPRAKADSLKSMTWNQL*
Ga0082390_120464	Ga0082390_1204641	F030135	GFLRGPKNREELATLSSFTDIWHSTFVGRQFPDAILPGKEAIDLVAGPLN*
Ga0082390_120468	Ga0082390_1204681	F030135	GPKNREELATLSSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGSLN*
Ga0082390_120469	Ga0082390_1204691	F030135	NREELATLSSFTDIWHSTFAGCQFPDAILPGREAFDLVAGPLS*
Ga0082390_122784	Ga0082390_1227842	F026908	LVKTRNESHRCVLTWFVSRWRNHQPKWAKRPHSKFSGRKALDGPAMRPETPLAVENSVGEPAANTGRLMSAWERERGE
Ga0082390_125275	Ga0082390_1252751	F030134	RTKIKKCKKDKIQPVLQRFKLRSCTFLIVEQTNFVYFYNTQEKIIQHRGSRHIYR*
Ga0082390_125481	Ga0082390_1254811	F000237	CLSATHLSDLTLTIIANIY*SLFDNIYKTYYVVFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLIFCYFWLHHANAHTVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*LALFFILLTFLPIIYNLYNNSNKHIPTIPMQNSLLQTFAFVIFVLSLLCIASILPCGRYYYEPEGGYVGNP*IKFSLQYIYLYMA*FL
Ga0082390_125482	Ga0082390_1254821	F000237	YYLVFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLIFCYFWLHHANAHTVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*LALFFILLTFLPIIYNLYNNSNKHIPTIPMQNSLLQTFAFVIFVLSLLCIASILPCGRYYYEPEGGYVGNP*IKFSLQYIYLYMA*FL
Ga0082390_128012	Ga0082390_1280121	F000344	MRPRSTHAALSGVGEHPARKCESAKWCAIGKERVA
Ga0082390_141923	Ga0082390_1419231	F030135	DFSEGLKDREELATLSSITDIGHSTFAGRQFPDAILPGREAVDLVAGPLN*