3300006227: Marine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico ? BC101

Overview

Basic Information

• IMG/M Taxon OID: 3300006227
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116840 | Gp0121719 | Ga0082386
• Sample Name: Marine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico ? BC101
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38890870
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.3
  • Long. (^o): -88.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030135	Metagenome / Metatranscriptome	186	Y
F047147	Metagenome / Metatranscriptome	150	Y
F060086	Metagenome / Metatranscriptome	133	Y
F082867	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0082386_105279	Not Available	661
Ga0082386_105293	Not Available	676
Ga0082386_105342	Not Available	588
Ga0082386_121574	Not Available	943
Ga0082386_122586	Not Available	541
Ga0082386_125924	Not Available	567

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0082386_105279	Ga0082386_1052791	F060086	DSNLLLSSGRNCEDRKRQYINLYDHETPLLYDLADLLY*
Ga0082386_105293	Ga0082386_1052931	F047147	TIIVAVTEGPVREEQLLHDMCLLGAMTVEITQILTRAR*
Ga0082386_105342	Ga0082386_1053421	F060086	GQEDPFELDSNLLLSSGRHGRDRKRQYFLYDNETPLLGDLADLLY*
Ga0082386_121574	Ga0082386_1215741	F082867	KSMTGGRKKGSRSRRVHHINDINHNDTNITVQYRVVKPLTFSSNTLVLSVNPSLTDLSTTLATIYRQYRVTELSFTFQCSDAAGAYALAMQYVPQIGGTPSTLPTTLAEFEGPAVGYCETGRGREYTYRVPSHVLNAMGLNYYATRTGVTPIQDPDILTQGLMIFLTSTPATPIVAYMHVKFEFQTLEDPSFLAKLMHDDKEADTLVVPRAKADSLKSMTWNQL*
Ga0082386_122586	Ga0082386_1225861	F030135	DREELATLSSFTDIWHSTFAGCQFPDAILPGTEAIDLVAGPLS*
Ga0082386_125924	Ga0082386_1259241	F030135	ATLSSITDIGHSAYAGRQFPDAILPGREAVDLVAGPLN*