3300006183: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof - 1398105537950 (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300006183
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095081 | Ga0097677
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof - 1398105537950 (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 314273670
• Sequencing Scaffolds: 16
• Novel Protein Genes: 21
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013935	Metagenome / Metatranscriptome	267	Y
F055860	Metagenome / Metatranscriptome	138	Y
F056741	Metagenome / Metatranscriptome	137	Y
F062910	Metagenome / Metatranscriptome	130	Y
F062911	Metagenome	130	Y
F087440	Metagenome / Metatranscriptome	110	Y
F087441	Metagenome	110	N
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0097677_1004324	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	6633
Ga0097677_1005808	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	5619
Ga0097677_1008460	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	4494
Ga0097677_1014888	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	3154
Ga0097677_1016869	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2909
Ga0097677_1056739	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1037
Ga0097677_1060345	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	968
Ga0097677_1065395	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	880
Ga0097677_1067995	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	842
Ga0097677_1077492	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	719
Ga0097677_1078342	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	707
Ga0097677_1080525	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	678
Ga0097677_1082197	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	656
Ga0097677_1084492	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	631
Ga0097677_1090142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	581
Ga0097677_1090378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0097677_1002969	Ga0097677_10029698	F092364	LYTKSIGLTINDILRNHIQPNASFRKQSVLIQSAAALTMIMFVTGLINGIFSLITFQNKELRQIGCGMYLFASSITTILTITMFTVKFWFVVVTQLYATINLSILRTDCVFIGPVSKLCLYLDGWFNACIAIERTVNVAKGVHFNKQMSKRIARLIITILPIIVMCTIVHEPIHHDLFQYTTQKYKLINNNLTMNRTQENHADQSKRSVKESFEYEIEHHVLCIIRYSRTLQTYNTITLFCHLIIPFLANLFSALFIIFGTARRRSTAQSNQTFKEHILKQLSEHRQLLISPIILLLL
Ga0097677_1003612	Ga0097677_10036122	F092364	MVMFVIGFINGICSFITFRNKELRKVGCVLYLLASSITSLLTITMFTVKFWFVVFIQLHSIISSSILQTDCAFIGPVLKLCLYLDGWLNACVAIERTVNVSKGITFDKKMSKRAARWIIPILFVIIMGTIIHEPISHELFEYPTQKYKPINNNLAMNKSMRNEIYSEYEIEHNVLCVIRYSRSVQTYNTITLFVHLVVPFLLNLCSALFIIFGTARQRSTTHNNQTLREHILKQINEHKQLLISPIILLILALPRLIISLVSGCVDPSNNPWLYLCGYFTSFIPPMLIFAVFVLPSELYWKTFKNSITKWRRHGCW*
Ga0097677_1004324	Ga0097677_10043249	F055860	MASLSVFVILTIHSVYLYDPIKGSGPAKVDAVQPLDRSHVLASISIIDHDVYINYHKGVHLDQYRVSTTSQWTLEKRFSKSDCCEAKDIGIRDVRCDAQSICLSIMQQGDLKWRLDIMSRDMKRIRRGTPMDAGENQHKFFSMLISLHDQRWLFVNWYTNKLWLVDQEGKPGLIKDSKIKNIRNICISPNGTYMAVRTEKPNTLKLYKLE*
Ga0097677_1005808	Ga0097677_10058085	F094111	VRKIVRKSFHFDFVVLTLSYNQPRFCLNTSWNSNAMTFANRSFVGTYSPSIFVNSNNSIYILNLDTTQILIWQNENHLNLTRIILRDLLNPQSIFVTMNGDIYVDTADYLEGVDRWIAENETWISVMNVPSFCYGLFIDIYENLYCSAHNNQRVDKKWSNGTTTIVAGTG
Ga0097677_1008460	Ga0097677_10084601	F087441	AVYGGSLIESNTNLSRSLSISILDENRNEIPFETSSNPIEFFIPRDSNLRIPPLILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKESIFTNSIEINQSYFSFMIDNQQTVGHRILIFGVQQETSNISEYEYRVYSSGCYYLNKENEWKGDGLRVGPKTNLSQTHCYSTHLT*
Ga0097677_1014888	Ga0097677_10148887	F087440	ETTNDEMKLVEKYIDLELKLASCLQDHRLASFKPRILALALISLELEKQQLQQPEMNIDWLASITYLQQLAKVFFDFPNLIVEYSFVCLFQVESDALLSCRDLIVRLSPSYKVVRLELADLAFISRAYNSSSTLKPLISLPDRPTYADVVCGRTVPATQ*
Ga0097677_1016869	Ga0097677_10168694	F092364	KQSVLIQTAAGLTMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLTITMFTIKFWFVILIQQYSIVRSSILRTDCVFIGPVLKLCLYLDGWLNACVAIERTVTVSKGVNFDKKMSRYAARWIILILPIFIIGTIVHEIKHHELLEFTNPKYDPININNNLTMDLSMENDTNVGYENEYNVLCVIRYSRSVQTYNTITLFIHLVIPFLANLFSALFIIFVTARRRSTAQTNKKSFKQHVVDQMREHKQLLISPLILLLLATPRLIISLVSGCVDPSENTWLYLCGYLISFTPPMLVFTVFVLPSELYRKTFKDSITRCRQQIHQ*
Ga0097677_1025540	Ga0097677_10255402	F095751	YTIKQYFDLFENDTRRTKISTIYLNSEEEGVFDEFNDFNKEKNGYYKLIRINVTKDVVWGKITGMSREQREKITIEFLTDLYIEASADLHSGTLTSNWCRLVDEIRLVLGKILPFYTPEKRYLNNY*
Ga0097677_1037008	Ga0097677_10370082	F095751	FNWYRTQLVFYLMRFSPNTLAQVQNIIAQNFNPPSVEQHHPYVAVYVRRSDKVKSKEMSQAYTLKQYFDLFENDTRRTNISTIYLNSEEEGVFDEFNDFNKEKQGYYKLIRINVTKDVVWGKITGMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKTLPFYTPENKYLNNY*
Ga0097677_1039155	Ga0097677_10391552	F095751	FQNRTFNWYRAQLIFYLMRFKPNILTEIQKIVAQNFQPPSVDDHHPYVAVYVRRSDKVQSKEMSQAYTLKQYFDLFDSDARRANISTVYLNSEDARVSNEFIEINKEKQGYYKLLTIKTTKDMVYGKLTQMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKMLPFYTPENKYWMDY*
Ga0097677_1056739	Ga0097677_10567392	F094111	MLFNDVTYRFIDKTNCFKNMSTVEINRQRKKILSIQIQMFLRIWIGLFIYQQQYFTLATFSFNQPKFRPNATWNSIATTFNTQSFVGEGTYGIFVNSNNSIYIPNRQTGQIHIWLNENHLSPTKTIEGSLSNPLSLFVTTNGDIYVDNGYNGRIDKWIRENE
Ga0097677_1060345	Ga0097677_10603452	F094111	MSTVEINRQIKKIFAIQMFLRIWISLFIYQQQYLTSATFSFNQPRFRINATWNSSATTFANQNFVGTLPRGIFVNSNNSIYILNRQTGQIHIWLNENHLYPTKTIEGNLSDPLSLFVTTNGDIYVDNGNNRRVDKWIVENETWISVMNITSRCFALFVD
Ga0097677_1065395	Ga0097677_10653951	F056741	LTENIGMVEPIDRLPGCNPITSSNAVPCSEGFEPKTMNNASTFHIQSKLTGLYLTFDPTTDIVYANGSTIAPDYRLVWGQGWAPKDLGRTVRNSEINRHFTMQDVLRLKSNDAATWEIFSFEQQSNNNYVAIKNLRYDQYLQVEEDFTISGQTKSITDACLFQLITPDGGYILEGLKPSS
Ga0097677_1067995	Ga0097677_10679952	F087441	NTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLQILPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFIYKFGKQSIYANSIQVNQSYFTFMIVNQQIVGHRTLIFGLEQENQEYEYRVYSSGCYYLNKENEWKGDGLRVGPKTNLSQTHCYSTHLT*
Ga0097677_1077492	Ga0097677_10774921	F062911	MIAIISDEDAIMIVIDCDVPRIHELAWLVAILAELGHERAAFIAREYLHSMIAAIGDEQETSMMVERQAYWQRKLAISIAFMLGANRELDSSITIKSIVSHLFHFNLSLSLSHTHTHNDKEMLQAPNCSNQSDEDMKLSLTRDTRHERDTKQASNEQQEATRTNR*
Ga0097677_1078342	Ga0097677_10783421	F062910	MFKILSLLLGLISLGVYGSIPSSTIENDLDGLVELHRQFLDRSPSISVYKAYEVRCRAVAACCPNEQENLFGLFTESQFNEKCLLNGTKTSTASVSSACMSTLRQLVQITKEPIYQQYFQVLGNASHRVRRIQIWKKQMQLVCSKDELNAYYCQRNNLDKFKSCQRKVLEMIANENIEDDGTIYKTYVSQWEQEYAIDNQKLAKAFPKP*
Ga0097677_1080525	Ga0097677_10805252	F094111	VKIVRKKSFHFDFVVLTLSYNQPRFCLNTTWNSNAKTFANRSFVSAYPYGIFVNSNNSIYIPNRQTNQIHIWQNENDLNPTKTISGNLSRPFSLFVTTNGNIYVDKWIRENETWISVMNVTAYCSGLFVDIDENLYCSMHNNHRVDKNWSTIAGTGV
Ga0097677_1082197	Ga0097677_10821972	F094111	IQMFLRIWIGLFIYQQQYFTLATFSFNQPKFRPNTTWNSIATTFATQSFVGEGPYGIFVNSNNSIYIPNRQTGKIHIWLNENDLSPTKTISGSLSYPLSLFVTTNGDIYVDNGYNSRIDKWIRENETWISVMNVPSQCYGLFYILDAKDAEPL*
Ga0097677_1084492	Ga0097677_10844921	F087441	MEPLAVYGRSQIESNTNLSRSLSISILDENGNEIPFETNSNPIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFPYRFVYKFDKQSSFTNSIEVNQSYFRFMIDNQQTVGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
Ga0097677_1090142	Ga0097677_10901421	F094111	RIWIGLFIYQQQYFTIATVSFNQPRFQINATWNSRAITFANQTFVGKYPYGIFVNSNNSIYIPNQQTGQIHIWQNENDLNPTKTISGNFSYPLSLFVTTNGDIYVDNGVNHRVEKWIVENETWISVMNVPSFCSGLFIDIYESLYCSMHNNHRVDKKCSNDTTTIVAGTGIIGSEFDMLNKPWGIFVDIHLDL
Ga0097677_1090378	Ga0097677_10903781	F013935	LLHQLLRLLGIVPEIWIFGEFVQFRQSRGRCFDIKDASSAARPTA*