3300006065: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics

Overview

Basic Information

• IMG/M Taxon OID: 3300006065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116709 | Gp0121445 | Ga0081425
• Sample Name: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics
• Sequencing Status: Permanent Draft
• Sequencing Center: Stanford University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107195016
• Sequencing Scaffolds: 21
• Novel Protein Genes: 34
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mini-Metagenome - Microbial Communities From The Yellowstone National Park
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.564833
  • Long. (^o): -110.86325
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000353	Metagenome / Metatranscriptome	1246	Y
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y
F014730	Metagenome / Metatranscriptome	260	Y
F019254	Metagenome	231	Y
F021443	Metagenome / Metatranscriptome	219	Y
F033339	Metagenome / Metatranscriptome	177	N
F038584	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F044249	Metagenome / Metatranscriptome	154	N
F052439	Metagenome / Metatranscriptome	142	Y
F054062	Metagenome / Metatranscriptome	140	N
F068874	Metagenome / Metatranscriptome	124	N
F069506	Metagenome	124	N
F070754	Metagenome / Metatranscriptome	122	Y
F076662	Metagenome / Metatranscriptome	118	Y
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F103256	Metagenome	101	Y
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081425_120395	All Organisms → cellular organisms → Bacteria	5568
Ga0081425_121746	Not Available	874
Ga0081425_123169	Not Available	3833
Ga0081425_124592	Not Available	1250
Ga0081425_125461	All Organisms → cellular organisms → Bacteria	1005
Ga0081425_130494	Not Available	2476
Ga0081425_131042	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	136948
Ga0081425_134151	Not Available	5264
Ga0081425_139657	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	3000
Ga0081425_141079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	9634
Ga0081425_142395	All Organisms → cellular organisms → Archaea	32809
Ga0081425_143755	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	3790
Ga0081425_144666	Not Available	2926
Ga0081425_147964	Not Available	1064
Ga0081425_148040	Not Available	1847
Ga0081425_149145	Not Available	2298
Ga0081425_155984	Not Available	1198
Ga0081425_156126	All Organisms → cellular organisms → Bacteria	3759
Ga0081425_156296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7430
Ga0081425_161958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10143
Ga0081425_162961	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	3188

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081425_120395	Ga0081425_1203953	F052439	VLLSTVNIVTMVSPMVGARIPLDLHHQLLEAAAQLQVTPSEVIVAALRQYLERLQAPVNSPTTKEILDRLERLERRIEVLEAHPAAPPSDLEALPVPELRRLARRVIGPGGDRDSSTGKHLRRAELLAALRQALSGN*
Ga0081425_121746	Ga0081425_1217461	F068874	VFGRLRRVLRFYERVELPDVPAQPQSLAYGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTARMKRRLGLPDREIVLFQTGKLYASIQVLNMKKYYLIRVQRDKLSYIIRRFPVVRWLRVDASAVRAGLSKAILAALLACAPLKKNRSVQRVEVAVRREEVVAHETLRLTTLLNDTIHLRNERLVIQYDTIRQKLRIEQVRPIVVVRDSVGRWNTVV
Ga0081425_123169	Ga0081425_1231695	F021443	MKCLLDDKKLTFTFRTSYVTCHNYDYNYFQTNGILSFAIIDLALKIIKQQQKRKFIILKKRKPIIHLLNYVDTLNFNFNSYKFDITFTLKNKHKTQLIYNLYLYRRIYYKDFDFYKNSLKVIECKNLCIIRLEDAYASRIQPKNLNLAIMLVHIFEKEEIDMIDIDGIIFYCVFLM*
Ga0081425_123169	Ga0081425_1231696	F021443	MKCLLDDNKLTFIFKSSYYVTCYNYGYNYYQVNGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLFNYVDILNFNFNSYKFDITFSLKNKCKTRLIYNLYLYRNLYRRRYYEDFYKDSLKIIERENLCIIRLEDAYASRIQPKNLNLAIML
Ga0081425_124592	Ga0081425_1245922	F104114	MERLRLWLECSQDEKFTVAEKELKNAIVARCDEFAGVWFLSRSVEDIAPSALADIVIQTVEALLGLQWRLEWDYDADADDMVLGSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVPLIKEVK*
Ga0081425_125461	Ga0081425_1254612	F019254	MPSEKIQEALSHLQDDWPIRVLLSALAEGVAELAALLGRAEAQKLPPEFLTRIRAIEEEMHELSRLCQNQPLPRGKNATRKIDSLPLF*
Ga0081425_130494	Ga0081425_1304941	F080678	MFVRKVDAKTTPISEVYDDWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPWRGISAGKLMRKLQKLGVTWSFNRDVVRHGVLQAVGYKLLDIEEFEHMRVFGRKE
Ga0081425_130494	Ga0081425_1304942	F088087	MLKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVEGKWAGVRVVACPEHAEQVIEQFIAGGEE*
Ga0081425_130494	Ga0081425_1304947	F092976	MMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWIDASWDAESDHEFLLVECRNGHLFRADEEFWLFDCDDHSDAGVYVPSETETEVSAHAG*
Ga0081425_131042	Ga0081425_13104223	F103256	MEYKKGQLDEILFLIKRGFSYGDIMSMPVYERRYFVQYIIELENSK*
Ga0081425_134151	Ga0081425_13415111	F086364	MEREKIIAALETAFAEISGAEYEDEPKTFAEFLESFKKFRDPDFPVYWIPWTIEEAVEELTGRKFGWHEDAFKDEWSYTGEFGFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVRAVEYFLRLVQQA*
Ga0081425_134151	Ga0081425_1341513	F092976	MMTVQEILHWKQELRRVLQEFLRKWKKCPKCGARWIDIAWDAESDHEWLIVECRSGHLFRADEEFWLFDYNGSGVYVPSEETETEVSAYASKGRKCVF*
Ga0081425_134151	Ga0081425_1341515	F088087	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAGKAIEQFIAGGDE*
Ga0081425_134151	Ga0081425_1341516	F080678	MFVRKVDAKTIPIAEVYDDWERIWMGEKEIRRFLTYTGLSAPPYNLRVGHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0081425_134151	Ga0081425_1341519	F100012	MDKEKVLQALKEAQAEYNIKDLDSFIKTAWEEGDVLQAQFVAETIERAVEILFERHFLWVHIVESEDCELWLPDGWYFFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSAEDAVDAVMRLAELIEQNLKSRAVR*
Ga0081425_139657	Ga0081425_1396572	F004367	MGNQTNGNGRDNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE*
Ga0081425_139657	Ga0081425_1396573	F003460	MPRASRNERYMHDLQHVYESLYDVLAPRGLYPEAFLLLVVNLRRPGELRDVAIELVVRARAGGSPVWRAHDSLRVPGRMKLRSLADALCGLMLRATYDIEALVPLPGSDRERHQGGARA*
Ga0081425_139657	Ga0081425_1396575	F004367	MGNQTNGNGRVNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE*
Ga0081425_139657	Ga0081425_1396576	F076662	MPKASRNERYMHDLQHVYESLYDVLSPRGLYPEAFLLLVVNLRRPGELRDVALELVVRARAGGSPVWRAHDSLRVPGRMKLRSLA
Ga0081425_141079	Ga0081425_1410798	F033339	MGVQGGSTGDPQIQGRSPNQSLFQGGCIVFRSKLTNLDVGVVVATPSPRVRVLFDNRNHATQKVILYVGFPDKESAERVYSWLITHGYRHYDRATDTGILKPRKAERVSGMAWEIKIHRPTVELVKRFVVKDLAR*
Ga0081425_142395	Ga0081425_14239517	F014730	LKMSDAMLFKRELGTNCNLDVKMLDTLNDGFILIIEQELVNGDSLALITSFVTQHKLSLLLDSERYFISTKALSPSSQHWWDS*
Ga0081425_143755	Ga0081425_1437553	F043237	MLEKTAKYIAQLSAKGYKYAIIGQLSGYNRKLVKRLEYDGFVFYLCRLQTKKEVIAYCLERAQGTFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAYTYNDRERLKAIKKKVKHWVVEALKRHGVKPKDAMLDYSRYVLKFSDVLKKKRQSPSPRTAH*
Ga0081425_144666	Ga0081425_1446663	F084856	MFVLYFHEDIKPMESGDAMSDLSNLMIVTHLYTKEHAEALSQTLPEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWLESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPSNCNPVRYVKSETQTDRKSSKPSGRR
Ga0081425_147964	Ga0081425_1479641	F086364	MEREKIIAALETAFAEISGAEYEDEPTTFAQFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLV
Ga0081425_147964	Ga0081425_1479642	F069506	MQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHCFINVAGTVIYYEDIIRLVTKLLNQIQSALADA*
Ga0081425_148040	Ga0081425_1480402	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEDYRRFVVKFSDVLKRKQRANSSTS*
Ga0081425_149145	Ga0081425_1491452	F070754	MIVRDFSFDIIDSTTNTYQPFDPRTDTLILAPLDRYKIRVKARYFVVIEPTQGALDNPDPNAFVTSFSTWTVGGEFSLNLFGQDFEQEGFAVGDGVFVFLHWSTGTPPLYAGYLCQIIGINGSAATFRINTVGTGSGVPDAQLPLRAVITMTNDRVELKSSFHFGNNSGPTSPLSALPFTSPHADAIRGYISLDPNDLPPPILYNLQKYASLEPVIDNLGGSAYPLSFRGRAFIIESTQFYAYRTNLDPQAQAPTSLYSLDGRIEVLLQAPVPVRDAALTFPCLLLHPNRKGRSLNFLNPGTLTIASGSYTLTPPSGFTPIRSVLAVTGRDSDHPRLDIPASLTLPNPVTGASGAVPTITNR
Ga0081425_155984	Ga0081425_1559842	F043237	MLEKTAKYIAQLSARGYKYAIIGQLSGYNRKLVKRLEYDGFVFYLCRLQTKKEVIAYCLERAQGTFKVYCLASKPLEFPNAPLKLWYDEKGQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYLAHVNKLLRQLYAILVHTYNDRERVRAIRRKVKHWVVEALKSQYGLKPKDAMADYGRYIVKFSDVLRKKVKKNLKP*
Ga0081425_156126	Ga0081425_1561264	F019254	MPSEKIREALFYLQDDWPIRVLLSTLAERVAELAALLGRAEAQKLSPEFLTRIRAIEEEMHALSRPCQNPPLPHRGNARRKVDNLPLF*
Ga0081425_156296	Ga0081425_1562962	F044249	MTKRDAILAFLAGSLTVVAKKYAMVLVALIVLGALANFLGWLHAVVSGEGCKAVKILQGTARLVFYIVFYLALLVALEQVAAYLIPPLLSVAILYEASLALKKAVQLNIIPASLVRQLTNVFRREPPEKAS*
Ga0081425_156296	Ga0081425_1562964	F038584	MTDTIKQIQKAAEELNAVLHATAATEEETKTLDAISKAAAHIRQQLREQMPNAGTRIKVGELRAARKLMQRYLQKTTVGTNIPREYIGESFYVTRQPVIEFIQDYLRTETLDVLAEITQVRLNPFTGAPAVVGEGGEKPTMGTTPQRVNSNYRKIAFTDRITDEALLSYPNIVDFLIWHGAYRIEVFLHNALIMAITAIASGATLPTGIPSPQIADLLIYMRAFHDQQAAIGPRGDWLANIAIVPFPYYWRLIFGGLKTTTGEYIQLDRQLQGLTLIASGTDQSNPTIVLNENELEVFYLGDITVNFGRVFDGASETNVRRLSMDLFYAPLPHPARPVLVADTESAINALA*
Ga0081425_156296	Ga0081425_1562967	F054062	MGNLRQLRWKDFCDGLDKDQPDEIQKEAEHIFFDHVFREVVLTFFQNVSELLLLYEAALSAPAMKPIADAKFNELFKQHPIPFYESFVPVLKNMGAEPEKATFLEICAYLNTYKS*
Ga0081425_161958	Ga0081425_1619586	F000353	MTQVQIGGTELKVRIEKALTEKGLKKLITNLEKELNGEHSFLPHDVEAQIRREIANAGVAVSQHGGWYRCIAAYLILPKLDDLLAVKSTSEEKNVAPIVQKLRNEALRESLGAFGLEVPARYARTSSGTGRTRVRIPREQKQQLVESFLDALPTFEALKDVLDTLPKNTNLMVKQIRSLVKRYLSIANRLQSVATHE*
Ga0081425_162961	Ga0081425_1629614	F043237	MDLEKTAKYIAQLSRHGYKYAVLGDLSNYNRELVKKIDLKGFVFYLCRLPSKKEVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLFTGQINRILRQLFEVLAYTYNDRERVRAIRRKVKHWVVEALKSQYGLKPKDAMTDYHRYVLKFSDVLRKKVKKNLKP*