3300006061: Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India

Overview

Basic Information

• IMG/M Taxon OID: 3300006061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116717 | Gp0121246 | Ga0081201
• Sample Name: Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India
• Sequencing Status: Permanent Draft
• Sequencing Center: Anand Agricultural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33242648
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Petroleum Pipeline Sediment, Khambat, Gujarat, India
• Type: Engineered
• Taxonomy: Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified → Petroleum Sediment → Microbial Communities From Petroleum Pipeline Sediment, Khambat, Gujarat, India

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Khambat, Gujarat, India
• Coordinates
  • Lat. (^o): 22.172778
  • Long. (^o): 72.983333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008775	Metagenome / Metatranscriptome	328	Y
F068106	Metagenome / Metatranscriptome	125	Y
F090845	Metagenome	108	Y
F096016	Metagenome	105	Y
F105852	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0081201_102261	All Organisms → cellular organisms → Bacteria → Proteobacteria	2777
Ga0081201_103104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	2182
Ga0081201_105930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1322
Ga0081201_105944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1320
Ga0081201_108830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	983
Ga0081201_110649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	866
Ga0081201_120589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	565

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081201_102261	Ga0081201_1022614	F008775	MEHPRISSIHVHMNRILFRDLPAVAAVERQLRLHSLDRLLDDEVEELPHLIDDASLELFGITERDTFHWALPDAVHAQYGRAEWEAQFDLLGHYTRDPNAHWHAFDLDLRCEEGGRLHCLEVFGRQLVCALHGLHPQAVLVFAQPETAQAA*
Ga0081201_103104	Ga0081201_1031041	F090845	PAASAIVLDTAMGLELIAARGEVASPDDPRLIEKLVLEDEESSVGTLLIGRRSDGNRYNRQEMDAIREIIPSLAEALRVARGRFSRESAMHQRMEEMAARLAQLEGGTPKPA*
Ga0081201_105930	Ga0081201_1059302	F096016	MKWASALLLGAILGFVLPTGLDMRSGVWMHSWAGWGTVHPHVNSPGLLFSWPLFLGSAIALRLVFNWHTR*
Ga0081201_105944	Ga0081201_1059442	F068106	MPMMTTVIAVALGLAPIPADGTVPFVGADTEKMIGRYSETVDDTGTTHLRGVNRRTGQLYHITVNPYGRVEGSVGDWTVSFNVKTST*
Ga0081201_108830	Ga0081201_1088301	F096016	MKWASALLLGAILGFVLPTGLDMRSGVWMNSWAAWGTVHPHVNSPGLLFSWPLFAGSAIALRTVFQWHTR*
Ga0081201_110649	Ga0081201_1106491	F008775	MEHLRISSIHVPMNRILFRDLPAVDAVERQLRLHALDRLLDDEVEELPHLIDDASLELFGITERDTFHWALPDEVRAQYGRAEWEAHFDVLGRYTRDPNAHWHGFGLDVRCPEGGRLHCLEVFGRQLVCAFHGLHPRASSPSPNARPPKRPRPHKETAARCPERRSFPFPV*
Ga0081201_120589	Ga0081201_1205892	F105852	MAHDEEPLLANPPSAEAAYHVRDYERFTKLLKYGAIICFIIGFLVVLIIS*