3300005793: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean. Combined Assembly of Gp0107627, Gp0107629, Gp0119879, Gp0119880, Gp0119881, Gp0107619

Overview

Basic Information

• IMG/M Taxon OID: 3300005793
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107619 | Ga0079404
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean. Combined Assembly of Gp0107627, Gp0107629, Gp0119879, Gp0119880, Gp0119881, Gp0107619
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116800075
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.933231
  • Long. (^o): -130.013645
  • Alt. (m): N/A
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038276	Metagenome	166	N
F047906	Metagenome / Metatranscriptome	149	N
F062154	Metagenome / Metatranscriptome	131	N
F105335	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079404_111022	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1040
Ga0079404_137017	All Organisms → cellular organisms → Bacteria	2525
Ga0079404_143003	Not Available	2811

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079404_111022	Ga0079404_1110222	F038276	MNLDFLLRLTNYVNIDKQIYLAVIKQFLTVLVIINHACVLLHGNHNYKDVFYDRLSNQYIRNACDFHNLHISYNNLGLVLEKFLLYIKIINNKV*
Ga0079404_137017	Ga0079404_1370171	F105335	ADHSAGVESLAFAPDSGQLASGSRDGRVRLHTIGGRLLRTFQGVGEPPDATGFGQAPRVLCLDWSEAGLIGGTSTGYVFRLPNGQGDWQPLHREKASPVYALGQASGQIVAGKTGQLLKLPKP*
Ga0079404_138799	Ga0079404_1387991	F062154	VDANGVKVLSVVNARPEQPVNSVANGVKVLSVVNARPEQPVNSVANGVKVLSVVNARPEQPVNSVANGVKVLSVVNARPEQPV
Ga0079404_143003	Ga0079404_1430032	F047906	VQEERRLFRLRGIAIVALAAKFTQKRTVTKERTPDAIRVPVAHGPVVGLGVLAVRWHHAVTKVRAALRLNMLVVAKRVSRVEIKFAVTAKAGLVQTQRLAVANAVVIRIVVAERVA*