Sample 3300005496

Basic Information
IMG/M Taxon OID	3300005496 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111641 \| Ga0068679
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	66108230
Sequencing Scaffolds	22
Novel Protein Genes	25
Associated Families	17

Dataset Contents

Total Genome Size

66108230

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	17
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F007404	Metagenome / Metatranscriptome	351	Y
F056643	Metagenome / Metatranscriptome	137	N
F065815	Metagenome / Metatranscriptome	127	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F080677	Metagenome / Metatranscriptome	115	N
F081391	Metagenome / Metatranscriptome	114	N
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F090444	Metagenome / Metatranscriptome	108	N
F093914	Metagenome / Metatranscriptome	106	Y
F097413	Metagenome / Metatranscriptome	104	N
F101227	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0068679_1005804	All Organisms → cellular organisms → Bacteria	2916	Open in IMG/M
Ga0068679_1005838	Not Available	586	Open in IMG/M
Ga0068679_1008113	Not Available	619	Open in IMG/M
Ga0068679_1009552	Not Available	578	Open in IMG/M
Ga0068679_1009660	Not Available	562	Open in IMG/M
Ga0068679_1010040	All Organisms → cellular organisms → Bacteria	2763	Open in IMG/M
Ga0068679_1010319	Not Available	514	Open in IMG/M
Ga0068679_1010476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3030	Open in IMG/M
Ga0068679_1014026	Not Available	687	Open in IMG/M
Ga0068679_1014154	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
Ga0068679_1015950	Not Available	928	Open in IMG/M
Ga0068679_1016167	Not Available	937	Open in IMG/M
Ga0068679_1016648	Not Available	792	Open in IMG/M
Ga0068679_1017141	Not Available	704	Open in IMG/M
Ga0068679_1020363	Not Available	544	Open in IMG/M
Ga0068679_1021840	Not Available	628	Open in IMG/M
Ga0068679_1094013	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
Ga0068679_1098887	Not Available	694	Open in IMG/M
Ga0068679_1098937	Not Available	772	Open in IMG/M
Ga0068679_1099220	Not Available	812	Open in IMG/M
Ga0068679_1103269	Not Available	1581	Open in IMG/M
Ga0068679_1110556	Not Available	559	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068679_1005804	Ga0068679_10058041	F080677	MSKEFYQELVENFTWWSVGMFALLAGAFNLTQGVWGWLSAICFLLASMVTLPVFRSWLTSKIIVLQSPKLVRKITIGAMFLLLLAVMLTPVSVDQQTTFASEARSDSTTELPIVKQSTETVPLIIKLISSLGG*
Ga0068679_1005838	Ga0068679_10058382	F056643	VADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068679_1008113	Ga0068679_10081131	F081941	ILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILIGKTLHLVLMLNIFG*
Ga0068679_1009552	Ga0068679_10095521	F004307	KERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPQRLSHPGKNGKVTNLYKTLASLYGVAQMTDEQLAGAEEFVMSAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMGGNEEVPF*
Ga0068679_1009552	Ga0068679_10095522	F081391	VGTRKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLVTRTGRVGHLTRFGFDGIVGDDPGYIVEVKA
Ga0068679_1009660	Ga0068679_10096601	F004307	MFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNPEPELEDVFVFEFEVDDEELPHPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVTSVIGREYQLTIETKPSGWYEIIHIAPVRRARRKEVMSGNEEVPF*
Ga0068679_1010040	Ga0068679_10100401	F081941	MLRNYLRRLNLTTKIALSSLFSLLVILALYIIFNILLFGILKIESTNYIISQFFSSLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVL
Ga0068679_1010319	Ga0068679_10103191	F007404	MELIDIFQILAAGHQHLTALDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFEE
Ga0068679_1010476	Ga0068679_10104763	F073601	MLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIIECGSIIRPLPVEKRALAGKGVLLQQG*
Ga0068679_1014026	Ga0068679_10140261	F005302	HFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTIGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYQLGAAPVDLSG*
Ga0068679_1014154	Ga0068679_10141542	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARYVYGMPQARVHRGRWASVVDAAEAARTEAEKVLRGR*
Ga0068679_1015950	Ga0068679_10159502	F073593	FFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068679_1016167	Ga0068679_10161671	F005302	HFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRLSGEAYVGGSSDYATVTVGKREPVEVTLTFLYGETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0068679_1016648	Ga0068679_10166481	F073601	ATCLVMALPSKRREGQRMFWLLRFAWRCAIKIMACGSIIRTLPVEKKAFVGMGVLFQQG*
Ga0068679_1017141	Ga0068679_10171411	F005302	MAHFGVIQGLYAGNFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVR
Ga0068679_1017141	Ga0068679_10171412	F056643	DDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI*
Ga0068679_1020363	Ga0068679_10203631	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLIAANRGPLMLRTNAAELALPVLEQDQTPDVESSALIGGVRLVWRQQSAEAQQS
Ga0068679_1021840	Ga0068679_10218402	F005302	GTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYNETTNSASNAIYDHFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068679_1094013	Ga0068679_10940133	F097413	LDFSNFVELSLGKNLRDPTGKADTSCEGDPGSTEVVYRYTIEDDKFCDGPWGTPCDYDVKFPTLAFYNCKIFFGASRHGSHLTGYFPIFDVENIKIEFGEIPRGRNRIDYAGPRVAAGENGVGIISVDSFTRNEWSIHTRFWDGESETYKDREYQIFTDDYFLSVARVAYYKGNWIAIAPIEREYKVANLGPDLKKRGNINQIEWKTFESDEVTYAGHAELITNRDFTELYAIFGARGDNSQIITIMKYKEDTNNEATGTFEKIAEINTSDTNGGVCYRPSGALDSQGNLHFTCDDTGGSLYYYTNAEGSWKKQLLTNNGLNGVLRIDEKDGIHVGFITFRPRSPAYMYSSDGNTWTRPIVANEIVNPKYGFTANMVGGVAIHGQNPYLLVAFEDWTNGGPRVGLIMFGAET*
Ga0068679_1098887	Ga0068679_10988871	F093914	EATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA*
Ga0068679_1098887	Ga0068679_10988872	F004791	MSEPAKIYDVEAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKIAFPDVAATLLVKAYGDDILNEPYAAAAL
Ga0068679_1098937	Ga0068679_10989371	F090444	NDPDNTRDRSLEVHPWLEEHHQFLENLYMLLWNCPPNNYSGYQSDKDMWARYLIDHRMMQKGRLLEIEPDDVRGLGKFLQNMIESTNLGNALPKGKYNGWLQGDINIPDIPGYTSTITLSVWVLPTSTAEDVQASLHIGSEQYELTLSNSTLLGRKYDVPPPYPNSCISSLRLSFDSEIYSGYYVLEPHFIHEDLKLQQVIINTGDNLDYADIYANTGVYTIWNSPKVLMELKGLYDTYGGGNVSILKSYRDCYSFS
Ga0068679_1099220	Ga0068679_10992202	F101227	MTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0068679_1103269	Ga0068679_11032693	F065815	KKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068679_1110556	Ga0068679_11105561	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPTRLSHPGKGGKVTNLYKVLAALYGVAQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005496: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences