3300005493: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005493
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111634 | Ga0068672
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57013531
• Sequencing Scaffolds: 13
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Microgenomates	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F007404	Metagenome / Metatranscriptome	351	Y
F013050	Metagenome / Metatranscriptome	275	Y
F064295	Metagenome / Metatranscriptome	128	N
F065815	Metagenome / Metatranscriptome	127	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F097407	Metagenome / Metatranscriptome	104	N
F098323	Metagenome / Metatranscriptome	104	Y
F101227	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068672_1001298	Not Available	521
Ga0068672_1001942	Not Available	632
Ga0068672_1005229	Not Available	1921
Ga0068672_1007225	All Organisms → cellular organisms → Bacteria	3146
Ga0068672_1013164	All Organisms → cellular organisms → Bacteria	1264
Ga0068672_1013233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	830
Ga0068672_1017709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Microgenomates	3722
Ga0068672_1019413	Not Available	640
Ga0068672_1022139	Not Available	3334
Ga0068672_1077378	Not Available	539
Ga0068672_1091357	Not Available	531
Ga0068672_1100707	Not Available	1338
Ga0068672_1104398	Not Available	660

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068672_1001298	Ga0068672_10012981	F081941	FHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVL
Ga0068672_1001942	Ga0068672_10019421	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGAPQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPARRLRQRKEATIDEVPF*
Ga0068672_1005229	Ga0068672_10052291	F065815	PETNNPNPQANQPTKPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068672_1005691	Ga0068672_10056911	F098323	MLKNKSWILLVIFALFGFITTSIPVWTQENTTTQFDNTILAKNQQPVVPIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAISSSDRIFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQN
Ga0068672_1007225	Ga0068672_10072251	F101227	TPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0068672_1013164	Ga0068672_10131641	F005631	KLLPQTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068672_1013164	Ga0068672_10131643	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLMLRTNAAELALPVLEQDQTPDVESSALVGGVRLIWREQSAE
Ga0068672_1013233	Ga0068672_10132331	F082732	MTEIVMNQTELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSALVGGVRLIWREQSAE
Ga0068672_1017709	Ga0068672_10177092	F073593	MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFVTLLINAAINLIVESAFPKIGTSQCPPEQVVRSNIFGDYCINLNINPVIDFAIVVINSLLLPASAIIAVLFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068672_1019413	Ga0068672_10194131	F073601	LQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAIEIMECGNIIRTLPVEKKALVGMGVLLQQE*
Ga0068672_1022139	Ga0068672_10221394	F002970	MSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIVPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0068672_1022139	Ga0068672_10221395	F005302	MAHFGVIQGLYAGNFAVEISTNGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068672_1022139	Ga0068672_10221396	F064295	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEV
Ga0068672_1077378	Ga0068672_10773781	F004307	GIMFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*
Ga0068672_1091357	Ga0068672_10913571	F007404	MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMEWFE
Ga0068672_1100707	Ga0068672_11007072	F097407	MSSDFPSLKEEYHHLYEYVSTLAWMQYEQMKKKGKEYTGYVYFFGRTVHRLLHPLYFFHQTEEPKFWFEEQTFDPNNPAETFPTWEAKKAYLLVRFREKKFEIYDANFSRKVLSRYNHQIIQWLVKNNYHRLIEFDRCLGFYLDILNWTEEHFISFYENRLVNLLVTDYSPKTLSTTESWCQVV*
Ga0068672_1104398	Ga0068672_11043982	F013050	MSKGKQPRASVNKVPKLLLSEIKVVYVLNGQEMGLEAAIF*