3300005484: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005484
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111635 | Ga0068673
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33236051
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005631	Metagenome / Metatranscriptome	394	N
F009403	Metagenome / Metatranscriptome	318	Y
F010840	Metagenome / Metatranscriptome	298	Y
F015737	Metagenome / Metatranscriptome	252	N
F016404	Metagenome / Metatranscriptome	247	N
F035322	Metagenome / Metatranscriptome	172	Y
F065815	Metagenome / Metatranscriptome	127	N
F073601	Metagenome / Metatranscriptome	120	Y
F078763	Metagenome / Metatranscriptome	116	N
F081391	Metagenome / Metatranscriptome	114	N
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F092122	Metagenome / Metatranscriptome	107	Y
F093914	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068673_100381	All Organisms → cellular organisms → Bacteria	2647
Ga0068673_100470	Not Available	1024
Ga0068673_100513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2341
Ga0068673_100786	Not Available	789
Ga0068673_101098	All Organisms → Viruses → Predicted Viral	2806
Ga0068673_102505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599
Ga0068673_108216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	4114
Ga0068673_109142	Not Available	531
Ga0068673_150298	Not Available	528
Ga0068673_154558	Not Available	621
Ga0068673_158622	Not Available	734
Ga0068673_161394	Not Available	724
Ga0068673_165080	Not Available	869
Ga0068673_166088	Not Available	1451
Ga0068673_167168	Not Available	997

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068673_100381	Ga0068673_1003812	F015737	MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWTNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNEKIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0068673_100470	Ga0068673_1004701	F065815	TEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0068673_100513	Ga0068673_1005131	F078763	NKQFFSGLEEALARLVGVILTLTFFLIYIWAVNGVSLSWLQAFFAFGLFWLVYEAIAFGLFILFDFFAKKSESETSTKNPNGQDTGTGTGPVFTGDSGSNSACDSGGGDCGGDF*
Ga0068673_100786	Ga0068673_1007862	F081941	YSDYKLEITTAIFFVLDFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSTTILIGKTLHLVLMLNIFG*
Ga0068673_101098	Ga0068673_1010982	F005631	MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068673_101098	Ga0068673_1010984	F082732	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEDTAETGASFGDFLKSVAYNDTRRLRAIYKSAKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSAL
Ga0068673_102505	Ga0068673_1025052	F073601	TCLVMVLPAKRREGQRMFWRLHFAWRCAIKIMACGRIIRTLPVEKKAFVGMGVLLQQG*
Ga0068673_108216	Ga0068673_1082161	F073601	MLQAKATCLVMVFPAKRREGQRMFRLLHIAWRCAIKIMACGSIIRTLPVEKRA
Ga0068673_109142	Ga0068673_1091421	F073601	LQAKATCLVMVLPSKRREGQRMFWLLHFAWRCAIKIMACGSIIRTLPVEKKALAGMGVLLQQG*
Ga0068673_150298	Ga0068673_1502981	F010840	EREREVNRMNLPFDKPLNKVTNGALAAALVVVVAWALREFVGVDLPAEVQSALALIVGFGISYLVPLSAAEAEAIAQAYYRK*
Ga0068673_150298	Ga0068673_1502982	F016404	VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLSQFGETNAERDVLVVVDEAAFVET
Ga0068673_154558	Ga0068673_1545581	F035322	ASIASLESRRQLAQRTGSVGEYNNQTIAETRRNEAAIAFERQIAPLSIDLDNTRYELMTASGVTIPNWAADVSDYAIVPGYFRNAQITSRTITRDRTTYTVSFDSDDFVTALRG*
Ga0068673_158622	Ga0068673_1586221	F081391	MKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALL
Ga0068673_161394	Ga0068673_1613942	F004307	MFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVMSAVGREYQLTIETKPSGWYEIIHIAPVRKMRRREATNGNEEIPF*
Ga0068673_165080	Ga0068673_1650802	F092122	MFNKLLRHLGISPKPEEAQGFDNPDGVEVRVTIEIAKEAMKKLIDSTLAAVSNMREMVLSVGLNPLPEVMQKAYEGLRFVIGWLTTPFSNTVSGSATG*
Ga0068673_166088	Ga0068673_1660882	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068673_166088	Ga0068673_1660883	F093914	LYSEAPNATAFVIYDQFESVNPALAVRWSPVGIKSNAIAFATSNDGVTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYQLGAAPVDLSG*
Ga0068673_167168	Ga0068673_1671681	F009403	VFRITRRGRGRGRAPVLSVVQSGARLEVREGRYGHGALYAYCDVDDSIAAHTLLLAFADMRARCVDIHVDIPVISEQRFFNSFRAGAGPQPDSDPDSDAGPSPRLPDADADPDPDRA*