3300005483: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2300 MetaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300005483
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046783 | Gp0111643 | Ga0068681
• Sample Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2300 MetaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26865667
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F016404	Metagenome / Metatranscriptome	247	N
F081391	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068681_101385	Not Available	2755
Ga0068681_151013	Not Available	1031
Ga0068681_159148	Not Available	627
Ga0068681_165846	Not Available	731

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068681_101385	Ga0068681_1013852	F004791	MPEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0068681_101385	Ga0068681_1013854	F002970	MSYSTVVDIIEMLANLNVQYNNAVVPTLRLTSQASWSDAAQLPARIIPVLGGLRLVESGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI*
Ga0068681_151013	Ga0068681_1510132	F000855	MDWLEDIWSKIVSWSDELSASLYNAVVEWINSVVAVWNGWMDALLHPADALPSVPQLRWVVDWLSDIVDYTALMYMLVDYVAYAQVVQQALIAQLTIVSIGLGFRAWLVIRRVVLVS*
Ga0068681_159148	Ga0068681_1591482	F016404	VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLSQFGETNAERDVLVVVDDAAFVETV*
Ga0068681_165846	Ga0068681_1658461	F081391	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLTKQTIEA
Ga0068681_165846	Ga0068681_1658462	F004307	MFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPPRLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVISAVGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*