Sample 3300005298

Overview

Basic Information
IMG/M Taxon OID	3300005298 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0060837 \| Gp0052398 \| Ga0071330
Sample Name	Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	150187695
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → unclassified Archaeoglobus → Archaeoglobus sp.	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hot Spring Microbial Communities From Great Boiling Spring, Nevada
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Hot Spring Microbial Communities From Great Boiling Spring, Nevada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Great Boiling Spring, Nevada
Coordinates	Lat. (^o)	40.71458	Long. (^o)	-119.369659	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F019254	Metagenome	231	Y
F027047	Metagenome	196	Y
F036249	Metagenome / Metatranscriptome	170	N
F038537	Metagenome	165	Y
F064214	Metagenome	129	Y
F074155	Metagenome	120	Y
F098235	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F006925

Metagenome

362

F008219

Metagenome

337

F019254

Metagenome

231

F027047

Metagenome

196

F036249

Metagenome / Metatranscriptome

170

F038537

Metagenome

165

F064214

Metagenome

129

F074155

Metagenome

120

F098235

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0071330_1032330	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3729	Open in IMG/M
Ga0071330_1039367	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	796	Open in IMG/M
Ga0071330_1040572	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	835	Open in IMG/M
Ga0071330_1041045	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → unclassified Archaeoglobus → Archaeoglobus sp.	23917	Open in IMG/M
Ga0071330_1061031	All Organisms → cellular organisms → Archaea	17692	Open in IMG/M
Ga0071330_1063198	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	23620	Open in IMG/M
Ga0071330_1069753	All Organisms → cellular organisms → Archaea	7321	Open in IMG/M
Ga0071330_1070450	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1325	Open in IMG/M
Ga0071330_1070915	All Organisms → cellular organisms → Archaea	47159	Open in IMG/M
Ga0071330_1074338	All Organisms → cellular organisms → Bacteria	16200	Open in IMG/M
Ga0071330_1088330	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	553	Open in IMG/M
Ga0071330_1115988	Not Available	9087	Open in IMG/M
Ga0071330_1121017	Not Available	1014	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0071330_1032330

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

3729

Open in IMG/M

Ga0071330_1039367

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

796

Open in IMG/M

Ga0071330_1040572

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

835

Open in IMG/M

Ga0071330_1041045

All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → unclassified Archaeoglobus → Archaeoglobus sp.

23917

Open in IMG/M

Ga0071330_1061031

All Organisms → cellular organisms → Archaea

17692

Open in IMG/M

Ga0071330_1063198

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota

23620

Open in IMG/M

Ga0071330_1069753

All Organisms → cellular organisms → Archaea

7321

Open in IMG/M

Ga0071330_1070450

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1325

Open in IMG/M

Ga0071330_1070915

All Organisms → cellular organisms → Archaea

47159

Open in IMG/M

Ga0071330_1074338

All Organisms → cellular organisms → Bacteria

16200

Open in IMG/M

Ga0071330_1088330

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

553

Open in IMG/M

Ga0071330_1115988

Not Available

9087

Open in IMG/M

Ga0071330_1121017

Not Available

1014

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0071330_1032330	Ga0071330_10323304	F027047	MDLSSLGIAVLSAVVYSLSMYVKKHLNPDNPQSFDAAKFLTTLIWGIIVGAILQFSGIPITEQSVEEQFVAYAGLIAITENIIKAVIRAVKR*
Ga0071330_1039367	Ga0071330_10393671	F036249	AGVSNFNAPMSIPNDTGLSAVYTWGWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP*
Ga0071330_1040572	Ga0071330_10405721	F038537	MRRTVYFWRGLYPLLRRFCREHNVSVNKIVNLAVQQFLGGCDVVELRLQARLDGLLREEAQLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDAQRPLKALNPREERVFRRIVARREQIAREIAEIEEMLLRDVKPFRLKPDLRGSRSRRRLCDKNKAPEPKGRSVIGSG*
Ga0071330_1041045	Ga0071330_10410454	F027047	MVEMDWSSLGIAVLSAVIYSLSMYVKKHLNPDNPQSFDKAKFLTTLIWGIIIGVVLQLSGVEITERTVEEQFVAYAGLIAITENIIKAVIRVTKIFTSFKEKNGGWSDGC*
Ga0071330_1061031	Ga0071330_10610314	F038537	MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQSFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTHLLDPQRPLKALNPREERVFRKIAARRERIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKNKLKGGEKPNGETA*
Ga0071330_1063198	Ga0071330_106319822	F064214	MSGKGDLKVLVKSAEDLAYALRDTIDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGRSK*
Ga0071330_1069753	Ga0071330_10697531	F027047	MDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGVILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*
Ga0071330_1070450	Ga0071330_10704502	F008219	MPKYLIEIILVVEAKNPQEARKIADYILNLPIPDKNIENAIETMRCEEVVQIKNPRT*
Ga0071330_1070915	Ga0071330_107091534	F027047	MELGSLGIAVLSAVVYSLSMYVKKHLNPNSPQSFDVAKFITTLIWGVIIGILLQAFGVPVTEQAVEEQFVAYAGIIAITENIVKTIIRVIRR*
Ga0071330_1074338	Ga0071330_107433818	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF*
Ga0071330_1088330	Ga0071330_10883301	F074155	VENSVDYVPFPEHESFEGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELTRMLDKVKDKWNPRAKNRILA
Ga0071330_1115988	Ga0071330_11159886	F006925	LAVEVSVLENFGREAELRKKWMRMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNR*
Ga0071330_1121017	Ga0071330_11210171	F098235	MIWGCLVRKGYRNLSIPEELYLELERFFKDSKGRYVSISEIVRVAIREFLDRQKPKTA*

Scaffold ID

Protein ID

Family

Sequence

Ga0071330_1032330

Ga0071330_10323304

F027047

MDLSSLGIAVLSAVVYSLSMYVKKHLNPDNPQSFDAAKFLTTLIWGIIVGAILQFSGIPITEQSVEEQFVAYAGLIAITENIIKAVIRAVKR*

Ga0071330_1039367

Ga0071330_10393671

F036249

AGVSNFNAPMSIPNDTGLSAVYTWGWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVVANDLFSNTDATLGKIAGIPYAVDRPTTTPNSFGGISRSNTTNPWWRCVVVDANNNPLTLQWLAQAYNLATENGGISPDIIVMPTDLFTAFEAQLLATQQYRQDDEIARAGFVGYLFKAATVLFDPRVPNNTVFIINSKDLMLVSQTDRPSAEPVEFPDRLVRGYKHGWALALVAKRLNSHARINNITP*

Ga0071330_1040572

Ga0071330_10405721

F038537

MRRTVYFWRGLYPLLRRFCREHNVSVNKIVNLAVQQFLGGCDVVELRLQARLDGLLREEAQLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDAQRPLKALNPREERVFRRIVARREQIAREIAEIEEMLLRDVKPFRLKPDLRGSRSRRRLCDKNKAPEPKGRSVIGSG*

Ga0071330_1041045

Ga0071330_10410454

F027047

MVEMDWSSLGIAVLSAVIYSLSMYVKKHLNPDNPQSFDKAKFLTTLIWGIIIGVVLQLSGVEITERTVEEQFVAYAGLIAITENIIKAVIRVTKIFTSFKEKNGGWSDGC*

Ga0071330_1061031

Ga0071330_10610314

F038537

MIVRVYFWKDLAPLLKRFCREHNIALNRVINLAVQSFIGTSNVEELKLCAKLNQLLREEAELRRVCNAMLRSGSYLPGYVQRVLREPGRSLTHLLDPQRPLKALNPREERVFRKIAARRERIAREIAEIQEQLLRDVKPFRLKPDLRLSRSRARGKNKLKGGEKPNGETA*

Ga0071330_1063198

Ga0071330_106319822

F064214

MSGKGDLKVLVKSAEDLAYALRDTIDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGRSK*

Ga0071330_1069753

Ga0071330_10697531

F027047

MDLSSLGIAVLSAVVYSLSMYVKKHLNTDNPQSFDATKFLTTLIWGIIVGVILQFSGVPITEQSVEEQFIAYAGLIAITENIIKAIIRAVDR*

Ga0071330_1070450

Ga0071330_10704502

F008219

MPKYLIEIILVVEAKNPQEARKIADYILNLPIPDKNIENAIETMRCEEVVQIKNPRT*

Ga0071330_1070915

Ga0071330_107091534

F027047

MELGSLGIAVLSAVVYSLSMYVKKHLNPNSPQSFDVAKFITTLIWGVIIGILLQAFGVPVTEQAVEEQFVAYAGIIAITENIVKTIIRVIRR*

Ga0071330_1074338

Ga0071330_107433818

F019254

MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALLGRAEAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF*

Ga0071330_1088330

Ga0071330_10883301

F074155

VENSVDYVPFPEHESFEGEGSRFEGHWQPGNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAEDLGLRARQVKTLVEWEDPPQLRKVLSRISLLLTQMGQRENWLLADFTGKLARKIVAFKLLTCQTVNANVGDAVVAYAIEKFGLKVKPPDLKADADDLELTRMLDKVKDKWNPRAKNRILA

Ga0071330_1115988

Ga0071330_11159886

F006925

LAVEVSVLENFGREAELRKKWMRMWERLGVRILKMPKWMQEIVLEDINTAIRNRIAIMEMIQNAKRNR*

Ga0071330_1121017

Ga0071330_11210171

F098235

MIWGCLVRKGYRNLSIPEELYLELERFFKDSKGRYVSISEIVRVAIREFLDRQKPKTA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005298: Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences