3300005274: Thermophilic enriched microbial communities from mini bioreactor at UC Davis - Sample SG0.5JP960

Overview

Basic Information

• IMG/M Taxon OID: 3300005274
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063625 | Gp0053839 | Ga0065724
• Sample Name: Thermophilic enriched microbial communities from mini bioreactor at UC Davis - Sample SG0.5JP960
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70257324
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Adapted Compost Microbial Communities From Mini Bioreactor At Uc Davis
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Grass → Composting → Bioreactor → Switchgrass Adapted Compost → Switchgrass Adapted Compost Microbial Communities From Mini Bioreactor At Uc Davis

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: University of California, Davis, USA
• Coordinates
  • Lat. (^o): 38.546
  • Long. (^o): -121.7533
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036417	Metagenome / Metatranscriptome	170	Y
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065724_111865	All Organisms → cellular organisms → Bacteria	1732
Ga0065724_113561	All Organisms → cellular organisms → Bacteria	1038

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065724_111865	Ga0065724_1118651	F098955	MDSSAIPIYMAGPFPVLYTSFINELENEVELDVALLIGGLPNMIAATRLPLDETWYRIEAALQSGDARLGVAGMPYRGESVMGVTEVYPSAYIGLECANGERLVLARIRGHDPNQEAEAYARDVIAAILKGHTPADLGEFIDV*
Ga0065724_113561	Ga0065724_1135612	F036417	MIQPARVPLRTRIPTVLVRLATDEGEIAFRARWRRSARELHHIILFKMRQGRPLWFQDEWGHDLVFRPECVWAAMVDGR*