Sample 3300004968

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300004968

3300004968: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_150m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004968 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0111061 \| Ga0066628
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_150m_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	107841434
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000244	Metatranscriptome	1468	Y
F001048	Metagenome / Metatranscriptome	793	Y
F009560	Metagenome / Metatranscriptome	316	Y
F014553	Metagenome / Metatranscriptome	262	Y
F023217	Metagenome / Metatranscriptome	211	Y
F025302	Metagenome / Metatranscriptome	202	Y
F029271	Metagenome / Metatranscriptome	189	N
F034189	Metagenome / Metatranscriptome	175	Y
F043443	Metagenome / Metatranscriptome	156	Y
F061392	Metagenome / Metatranscriptome	132	N
F062150	Metagenome / Metatranscriptome	131	N
F067124	Metagenome / Metatranscriptome	126	N
F075397	Metagenome / Metatranscriptome	119	N
F083344	Metagenome / Metatranscriptome	113	N
F096498	Metagenome / Metatranscriptome	104	N
F097134	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066628_1001251	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	586	Open in IMG/M
Ga0066628_1004906	Not Available	926	Open in IMG/M
Ga0066628_1012769	Not Available	1091	Open in IMG/M
Ga0066628_1013306	Not Available	879	Open in IMG/M
Ga0066628_1014945	Not Available	712	Open in IMG/M
Ga0066628_1023625	Not Available	853	Open in IMG/M
Ga0066628_1026347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1419	Open in IMG/M
Ga0066628_1038790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
Ga0066628_1107808	Not Available	525	Open in IMG/M
Ga0066628_1167025	Not Available	1044	Open in IMG/M
Ga0066628_1173237	Not Available	1012	Open in IMG/M
Ga0066628_1175883	Not Available	564	Open in IMG/M
Ga0066628_1209332	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	682	Open in IMG/M
Ga0066628_1221159	Not Available	1010	Open in IMG/M
Ga0066628_1233566	All Organisms → Viruses → Predicted Viral	1596	Open in IMG/M
Ga0066628_1236110	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
Ga0066628_1240519	Not Available	1492	Open in IMG/M
Ga0066628_1242006	All Organisms → Viruses → Predicted Viral	1158	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066628_1001251	Ga0066628_10012511	F061392	VVIVLQLETFASELDTPDPTFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
Ga0066628_1004906	Ga0066628_10049062	F001048	MKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRIELLVNSRVRWELGSENFMKWDSCGYKDIPTLARAYGIT*
Ga0066628_1012769	Ga0066628_10127692	F029271	MSKLSDLQEIKKLLDVDFRKDKFLENSYNNSPCFGYDTAESYVANIHQFLSEKYGEAVIYNFMQEVERLRITTLKMYIESNITSYQRFGAQK*
Ga0066628_1013306	Ga0066628_10133061	F083344	MITTIEFTSDDLTMLRGVMSCTAKKSVRRHALNGFHINSDHIVGTDGSRLAKFNTPHFDGELPERGVIIPSIKIPFSVHTVIITIDDNKITVDKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKSIKATITQIEFGGELSLIYVNIPELPEFTFGIMPARF*
Ga0066628_1014945	Ga0066628_10149451	F029271	MSKLSDLQDIKELLDVDFRKDKFLENSYNNSPCFGYDAAKSYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQRFGAQK*
Ga0066628_1023625	Ga0066628_10236252	F029271	MSKLSDLQDIKELLDVDFRRHQFLDNQYNNSPSFNYDAAKSYVADIHQFLSEKYGEAVIYNFMQEVERLRITTLKMYVESNIVSYQRFGAQK*
Ga0066628_1023625	Ga0066628_10236253	F075397	MKYWHKRVEVVSFFDLDQENQDIELKDDDNAEELTFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAV
Ga0066628_1026347	Ga0066628_10263471	F034189	NDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIG*
Ga0066628_1038790	Ga0066628_10387901	F034189	SNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGLIVTRQRVKR*
Ga0066628_1107808	Ga0066628_11078081	F097134	LVINITTEDIMILDTLVMLLVLTAVIGSVAIWASWNEINTNEWIANNVDGCPFKYKWQMADDLSASRLGNGSKMDVKFSYLMVMPKAEVKKLWLLNKEGK*
Ga0066628_1167025	Ga0066628_11670251	F062150	MNKIVRLLMILGMVSVLSAQSSITVKNSVIGYVEVGDSVSFSKPILFSYVKSDDSKWFATFFFGPTWNDEKIYVEELFYKPYSVANGGKFNIGFGQQLIPYGSNLPYLDLTRRDMFTYQTSWDVGELVLGRGVSVYGALGEKGYLETYFGDDINHIWSDYASARVSYEVANQFVALSVDNQERQSIDVSGLNDKIEYIAEYSLSDEYYFARAVIKPGLYGLNLLAGYESFPNKDAKPLYGVMWTFDGEYPGSFLSAEFSGEGDITFKINADLGILKL
Ga0066628_1173237	Ga0066628_11732371	F009560	MPFTENKKSYLDSLFSISTLLKRWHTEIQNKDINKNYMIDSLNKWIKKLEKLRHEIM
Ga0066628_1175883	Ga0066628_11758831	F096498	MGMYDEINVDIKCPKCGANEMDWQSKDYMCGLDMIDPDKVQEFYTHCDKCDTFITYRRGTENDEEVIKCRAEPYSLDEVEKMGFKYKCDGR*
Ga0066628_1189047	Ga0066628_11890471	F000244	VVLFPSHDFFSATMKVVLCLALACAAFAAEVTPVQKVIEMMNGMLEKGKKEKHDEQVQFAAYKQFCDDTTVEKKRAIAEANEQIEVLKADIEKYTSTAEKLTKEIAELEADLALWNGDIKAATKVREIEKADYDTLHTDYSESIDALERAIAVLKKQSHDRKQTELIQLTKVKLIP
Ga0066628_1209332	Ga0066628_12093322	F043443	VNDKLLELKRKKLQHQILYLKTELEETTFIFNDSLVEFEKEFGEYFRKKKTSKDAKRVATDPIEYDIPEKDVNIVFKKIAQKTHPDKLENKNISQVRHNKLVDLYKEALGSVKNKDWSRVMEIAMELGIDISKIKK
Ga0066628_1221159	Ga0066628_12211593	F014553	MSKKVKGQFDHYKTFTLKDGTKFKAKDESDAKLYKKKVGE*
Ga0066628_1233566	Ga0066628_12335661	F067124	MKQSEMKMPKRVINYRDRVTQQEYNVDSKIVSTRPTHKVKGVEVIDGVEYYVFSI*
Ga0066628_1236110	Ga0066628_12361102	F025302	LTGLFRDWRLRRAGAKEARLAALEAGQARAKRVAEITAHLDTLGDDDLDRRLRQYQRASGRVRMGETNQPGRGG*
Ga0066628_1240519	Ga0066628_12405195	F023217	IMKKWKTEKAIASSKKIDKGLKAFGKSIGLDKPFFAAKTFDDVTGTWKVCPCCGGDSLEADILKLI*
Ga0066628_1242006	Ga0066628_12420061	F001048	MKTKNVKGKNKPELRFKSKKQFFWRFSVLKKYGGEITVTDRTPEMDVKEYNRIELLVNDRVRWELGLEGFNIWEMNGAKDIPTLAKAYGIK*

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