3300004833: Mid-Atlantic Ridge North Pond Expedition - Sample 1383C Deep

Overview

Basic Information

• IMG/M Taxon OID: 3300004833
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114576 | Gp0113268 | Ga0071101
• Sample Name: Mid-Atlantic Ridge North Pond Expedition - Sample 1383C Deep
• Sequencing Status: Permanent Draft
• Sequencing Center: The Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58462782
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Subseafloor Aquifer → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.8
  • Long. (^o): -46.05
  • Alt. (m): N/A
  • Depth (m): 200 to 332

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F001583	Metagenome / Metatranscriptome	668	Y
F009426	Metagenome / Metatranscriptome	318	Y
F015261	Metagenome / Metatranscriptome	256	Y
F015790	Metagenome / Metatranscriptome	252	Y
F018935	Metagenome / Metatranscriptome	232	Y
F023215	Metagenome / Metatranscriptome	211	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0071101_108958	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Halteriidae → Halteria → Halteria grandinella	1468
Ga0071101_116863	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	889
Ga0071101_135224	Not Available	556
Ga0071101_137856	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	533
Ga0071101_138749	All Organisms → cellular organisms → Bacteria	527
Ga0071101_140225	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0071101_108958	Ga0071101_1089582	F009426	MYEGQLEIRLGGAIHLMAAEVNKDVKLSSGMITGEASYTVILFMTTSPCVISAGAARETLFEGKADYCMSVCE*
Ga0071101_116863	Ga0071101_1168632	F023215	MKFSRDLLELRDKETKLVKMKRYEEAEKVKLKADLLEQFERNKIEAEMAKMIEKKES*
Ga0071101_131367	Ga0071101_1313671	F000060	LKGFLEGRIRAAALEEVGNLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEDESQQGSLKEAFELTHDEIKILKKLLKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPKQTKILEGNINPQLKIELKGVEDEDI*
Ga0071101_135224	Ga0071101_1352241	F015261	VWEDGDATVHILCDGCDREYDVLTGDTAGLELCTFCGHYLEVNSESGEVDESEENSWD*
Ga0071101_137856	Ga0071101_1378561	F001583	FTNKHLNSDQLLRLMLFHYFTP*YYLYLIQLHLLFCHESWDADSGENTIEDKSGSYIS*FYDAFLKEIQDA*F*TIIVYVFF*FHVIEPLIINYFYFER*NISEYDEIRFYGVAPH*YFRPLMGLLVVSPTHYEGLF*LVMFFILLTFLPVIYGFYNNNENNSIILPMKITKFQTFF
Ga0071101_138749	Ga0071101_1387491	F015790	MTEIDAKLLPFLELLGGGKIQKTRLREHEPRTITEAQKAKAKEVMAIDYQNGWCNELISTKI*
Ga0071101_140225	Ga0071101_1402251	F018935	MRLRNTHSYYDYINKYSARFLNKYQSGAHFHLGRGSGFLELLRLKAARMKGNRNWQWFDVRYGFKFVYVLYIPQMIFAIVCYLLTPVWRRIDERYHLRYGDGEEDDIEDVEPFVTYQPRKKPMTRRKYADAIKLVYDDKEEM