3300004755: Marine sediment microbial communities from Formosa Ridge, South China Sea - G1-2

Overview

Basic Information

• IMG/M Taxon OID: 3300004755
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114441 | Gp0111473 | Ga0068403
• Sample Name: Marine sediment microbial communities from Formosa Ridge, South China Sea - G1-2
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2776003
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomics Analysis Of Sediments Collected From Formosa Ridge
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Cold Seeps → Sediment → Marine Sediment → Metagenomics Analysis Of Sediments Collected From Formosa Ridge

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: South China Sea, southwestern Taiwan
• Coordinates
  • Lat. (^o): 22.11546667
  • Long. (^o): 119.28443333
  • Alt. (m): N/A
  • Depth (m): 1146

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056621	Metagenome	137	Y
F076930	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0068403_14201	Not Available	923
Ga0068403_15455	Not Available	623

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0068403_14201	Ga0068403_142011	F056621	LNDKERATLAERIQKTVQEKHPHYQITKRKDEIEKEFEVKNENRRF*
Ga0068403_15455	Ga0068403_154551	F076930	MTEHKYIELTKRAFDLGFRQGYEIANRTLIDENTGKDEFANIVLETAINSLESTVFESIAAELDLMNEKYPAFDSWKVFSDGVIHGAGENFLDRTGNEE*