3300004638: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_135m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004638
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111054 | Ga0066621
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_135m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79800389
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
Not Available	10
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004989	Metagenome / Metatranscriptome	416	Y
F005649	Metagenome / Metatranscriptome	394	Y
F006917	Metagenome / Metatranscriptome	362	Y
F015796	Metagenome / Metatranscriptome	252	N
F016881	Metagenome / Metatranscriptome	244	Y
F017326	Metagenome / Metatranscriptome	241	N
F021863	Metagenome / Metatranscriptome	217	Y
F024324	Metagenome / Metatranscriptome	206	N
F025971	Metagenome / Metatranscriptome	199	Y
F029271	Metagenome / Metatranscriptome	189	N
F043154	Metagenome / Metatranscriptome	157	Y
F055781	Metagenome / Metatranscriptome	138	N
F058538	Metagenome / Metatranscriptome	135	N
F061392	Metagenome / Metatranscriptome	132	N
F066454	Metagenome / Metatranscriptome	126	N
F067124	Metagenome / Metatranscriptome	126	N
F069996	Metagenome / Metatranscriptome	123	N
F070152	Metagenome / Metatranscriptome	123	N
F075397	Metagenome / Metatranscriptome	119	N
F078263	Metagenome / Metatranscriptome	116	N
F089036	Metagenome / Metatranscriptome	109	N
F098166	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066621_1002179	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1524
Ga0066621_1005188	Not Available	567
Ga0066621_1008960	Not Available	732
Ga0066621_1020033	Not Available	1528
Ga0066621_1080592	Not Available	684
Ga0066621_1094364	All Organisms → Viruses → Predicted Viral	1186
Ga0066621_1134226	Not Available	663
Ga0066621_1156888	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	537
Ga0066621_1162561	Not Available	628
Ga0066621_1166405	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.	528
Ga0066621_1166590	Not Available	503
Ga0066621_1167358	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	562
Ga0066621_1167820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1019
Ga0066621_1174486	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	671
Ga0066621_1176265	Not Available	655
Ga0066621_1187281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	560
Ga0066621_1191076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	931
Ga0066621_1194173	Not Available	956
Ga0066621_1198382	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1028
Ga0066621_1198907	Not Available	836

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066621_1002179	Ga0066621_10021791	F055781	MLGVAMGCKLYNKNIKTIYPVALSGYVYKNKKMWYDRLNDRHKFDGDFKVVQSDYPYQHKLKLDESLPLDQTYEAKAWDWMVKNIEPSENVLFWDVGIKEYDLSYIEPIKWHKSEYEMIIDRELRRKHEQVKHNFF*
Ga0066621_1005188	Ga0066621_10051882	F075397	MKYWHKRVDVVSFFDLDKESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
Ga0066621_1008960	Ga0066621_10089603	F098166	MNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNTLTFIRLLK*
Ga0066621_1020033	Ga0066621_10200333	F029271	MSKLSDLQEIKKLLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0066621_1027598	Ga0066621_10275981	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVS
Ga0066621_1027808	Ga0066621_10278081	F066454	MSIRFDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVS
Ga0066621_1080592	Ga0066621_10805922	F069996	MAEKIFFDMQALNPHVKIICGSFKPNGSSAVDNDSNTGAGWTVARGGVGIFTVTLGDKYPGILSATCSVALNAVADTKVQFGAIDVVSAKTVVINVITTASAADIAANANNRIHFCLVLRNTDMTK*
Ga0066621_1094364	Ga0066621_10943642	F043154	MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRLYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNAHPTHGVATYLTAIKVADDHEPGYKGANAEISEFLTA*
Ga0066621_1104877	Ga0066621_11048771	F005649	GAEIGFDSCYLTIECNTSLSTTCYNRLTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA*
Ga0066621_1134226	Ga0066621_11342263	F021863	MAKKKKSLHEKNMKQFELKDGTKFWAKDEEDAKLYRKHVGEK*
Ga0066621_1156888	Ga0066621_11568881	F061392	PDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
Ga0066621_1162561	Ga0066621_11625612	F067124	MKQSEMKMPKRVINYRDQMTQQEYNVDSKIVSTRPTHKVKGVEVIDGVKYYVFSI*
Ga0066621_1166405	Ga0066621_11664052	F089036	MKKIDLQGSILAGVGTLIIGLTGWLMTTTLGVDKYQDVMEVRLDHAEENYDKLRLDSPNHSMDTCPVCMHMKLGYK*
Ga0066621_1166590	Ga0066621_11665901	F070152	KSGAIDEIKEIAKQRLNKIEALLDGKHNKNYQDSLLKLARFSLLRSV*
Ga0066621_1167358	Ga0066621_11673581	F017326	MNDYEKVQIEINESITSDNFKEHLRKNYHNSYEEYESDTRHIDLDVYYEKNSIPLSELIPFGMTIKKYFSKEERLNRGENISYVKFD*
Ga0066621_1167820	Ga0066621_11678201	F024324	AIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
Ga0066621_1174486	Ga0066621_11744861	F078263	ALLFLSIFMEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
Ga0066621_1176265	Ga0066621_11762652	F016881	MAVIADKQWWKSKTVWTSVVAGVVGVLQAAGVVEAVPEVVWTLLAAFGLYGVRDAVGKA*
Ga0066621_1187281	Ga0066621_11872811	F015796	MNKQQMLKYDDVRDRILIREWFKLKGVVLEHGSKYGVDLKGKEYDVEISHLSFDSLWEQWKKENRFRIEIRKRNHYWNGIYNKTHTTHFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIIKDMKTST*
Ga0066621_1191076	Ga0066621_11910762	F025971	MKITAGVTLTEADGGVIHIADSDACAIVLPTITQSGVEYKFIMANDAGGSITITSADSAGNYYQGTLAVHSVDADDGFAANGTSNNIITMNATTTGGLLGSEVNLRSVVGVGWVVYGNVLGTNATGATPFSG*
Ga0066621_1194173	Ga0066621_11941731	F058538	MGEGKVYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKSNPHTAN*
Ga0066621_1198382	Ga0066621_11983822	F004989	MSIELEELNTEKERLEGDRKVLLDRLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKNQSPQESEDEKESSDDDS*
Ga0066621_1198907	Ga0066621_11989071	F006917	QKFIENLHKEINRKKIRNERIFNTIYLIGVFTFDFIIDTGEWI*