NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004638

3300004638: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_135m_RNA (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300004638 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046785 | Gp0111054 | Ga0066621
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_135m_RNA (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size79800389
Sequencing Scaffolds20
Novel Protein Genes23
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
Not Available10
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal inletsea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004989Metagenome / Metatranscriptome416Y
F005649Metagenome / Metatranscriptome394Y
F006917Metagenome / Metatranscriptome362Y
F015796Metagenome / Metatranscriptome252N
F016881Metagenome / Metatranscriptome244Y
F017326Metagenome / Metatranscriptome241N
F021863Metagenome / Metatranscriptome217Y
F024324Metagenome / Metatranscriptome206N
F025971Metagenome / Metatranscriptome199Y
F029271Metagenome / Metatranscriptome189N
F043154Metagenome / Metatranscriptome157Y
F055781Metagenome / Metatranscriptome138N
F058538Metagenome / Metatranscriptome135N
F061392Metagenome / Metatranscriptome132N
F066454Metagenome / Metatranscriptome126N
F067124Metagenome / Metatranscriptome126N
F069996Metagenome / Metatranscriptome123N
F070152Metagenome / Metatranscriptome123N
F075397Metagenome / Metatranscriptome119N
F078263Metagenome / Metatranscriptome116N
F089036Metagenome / Metatranscriptome109N
F098166Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066621_1002179All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1524Open in IMG/M
Ga0066621_1005188Not Available567Open in IMG/M
Ga0066621_1008960Not Available732Open in IMG/M
Ga0066621_1020033Not Available1528Open in IMG/M
Ga0066621_1080592Not Available684Open in IMG/M
Ga0066621_1094364All Organisms → Viruses → Predicted Viral1186Open in IMG/M
Ga0066621_1134226Not Available663Open in IMG/M
Ga0066621_1156888All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales537Open in IMG/M
Ga0066621_1162561Not Available628Open in IMG/M
Ga0066621_1166405All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.528Open in IMG/M
Ga0066621_1166590Not Available503Open in IMG/M
Ga0066621_1167358All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote562Open in IMG/M
Ga0066621_1167820All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1019Open in IMG/M
Ga0066621_1174486All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua671Open in IMG/M
Ga0066621_1176265Not Available655Open in IMG/M
Ga0066621_1187281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.560Open in IMG/M
Ga0066621_1191076All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales931Open in IMG/M
Ga0066621_1194173Not Available956Open in IMG/M
Ga0066621_1198382All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1028Open in IMG/M
Ga0066621_1198907Not Available836Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066621_1002179Ga0066621_10021791F055781MLGVAMGCKLYNKNIKTIYPVALSGYVYKNKKMWYDRLNDRHKFDGDFKVVQSDYPYQHKLKLDESLPLDQTYEAKAWDWMVKNIEPSENVLFWDVGIKEYDLSYIEPIKWHKSEYEMIIDRELRRKHEQVKHNFF*
Ga0066621_1005188Ga0066621_10051882F075397MKYWHKRVDVVSFFDLDKESQAAELKDDDNAEELAFLIAENGDEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFG*
Ga0066621_1008960Ga0066621_10089603F098166MNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNTLTFIRLLK*
Ga0066621_1020033Ga0066621_10200333F029271MSKLSDLQEIKKLLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0066621_1027598Ga0066621_10275981F066454MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVS
Ga0066621_1027808Ga0066621_10278081F066454MSIRFDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVS
Ga0066621_1080592Ga0066621_10805922F069996MAEKIFFDMQALNPHVKIICGSFKPNGSSAVDNDSNTGAGWTVARGGVGIFTVTLGDKYPGILSATCSVALNAVADTKVQFGAIDVVSAKTVVINVITTASAADIAANANNRIHFCLVLRNTDMTK*
Ga0066621_1094364Ga0066621_10943642F043154MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRLYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNAHPTHGVATYLTAIKVADDHEPGYKGANAEISEFLTA*
Ga0066621_1104877Ga0066621_11048771F005649GAEIGFDSCYLTIECNTSLSTTCYNRLTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA*
Ga0066621_1134226Ga0066621_11342263F021863MAKKKKSLHEKNMKQFELKDGTKFWAKDEEDAKLYRKHVGEK*
Ga0066621_1156888Ga0066621_11568881F061392PDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
Ga0066621_1162561Ga0066621_11625612F067124MKQSEMKMPKRVINYRDQMTQQEYNVDSKIVSTRPTHKVKGVEVIDGVKYYVFSI*
Ga0066621_1166405Ga0066621_11664052F089036MKKIDLQGSILAGVGTLIIGLTGWLMTTTLGVDKYQDVMEVRLDHAEENYDKLRLDSPNHSMDTCPVCMHMKLGYK*
Ga0066621_1166590Ga0066621_11665901F070152KSGAIDEIKEIAKQRLNKIEALLDGKHNKNYQDSLLKLARFSLLRSV*
Ga0066621_1167358Ga0066621_11673581F017326MNDYEKVQIEINESITSDNFKEHLRKNYHNSYEEYESDTRHIDLDVYYEKNSIPLSELIPFGMTIKKYFSKEERLNRGENISYVKFD*
Ga0066621_1167820Ga0066621_11678201F024324AIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
Ga0066621_1174486Ga0066621_11744861F078263ALLFLSIFMEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
Ga0066621_1176265Ga0066621_11762652F016881MAVIADKQWWKSKTVWTSVVAGVVGVLQAAGVVEAVPEVVWTLLAAFGLYGVRDAVGKA*
Ga0066621_1187281Ga0066621_11872811F015796MNKQQMLKYDDVRDRILIREWFKLKGVVLEHGSKYGVDLKGKEYDVEISHLSFDSLWEQWKKENRFRIEIRKRNHYWNGIYNKTHTTHFVQMNKSGHELLVYPEDLIMEYSNNEVELEYLRGFNLKERTFMFIIKDMKTST*
Ga0066621_1191076Ga0066621_11910762F025971MKITAGVTLTEADGGVIHIADSDACAIVLPTITQSGVEYKFIMANDAGGSITITSADSAGNYYQGTLAVHSVDADDGFAANGTSNNIITMNATTTGGLLGSEVNLRSVVGVGWVVYGNVLGTNATGATPFSG*
Ga0066621_1194173Ga0066621_11941731F058538MGEGKVYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKSNPHTAN*
Ga0066621_1198382Ga0066621_11983822F004989MSIELEELNTEKERLEGDRKVLLDRLQEYQQGLTQTQQQIQAIGGAIQTCNFFIGKNQSPQESEDEKESSDDDS*
Ga0066621_1198907Ga0066621_11989071F006917QKFIENLHKEINRKKIRNERIFNTIYLIGVFTFDFIIDTGEWI*

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