3300004637: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_150m_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004637
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0111049 | Ga0066616
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_150m_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70477248
• Sequencing Scaffolds: 23
• Novel Protein Genes: 29
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → Viruses → Predicted Viral	6
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F005429	Metagenome / Metatranscriptome	401	Y
F010879	Metagenome / Metatranscriptome	298	Y
F011155	Metagenome / Metatranscriptome	294	Y
F016206	Metagenome / Metatranscriptome	249	Y
F018265	Metagenome / Metatranscriptome	236	Y
F025857	Metagenome / Metatranscriptome	200	Y
F029271	Metagenome / Metatranscriptome	189	N
F041248	Metagenome / Metatranscriptome	160	Y
F051054	Metagenome / Metatranscriptome	144	N
F051476	Metagenome / Metatranscriptome	144	N
F052275	Metagenome / Metatranscriptome	143	Y
F059353	Metagenome / Metatranscriptome	134	N
F061392	Metagenome / Metatranscriptome	132	N
F062676	Metagenome / Metatranscriptome	130	N
F067124	Metagenome / Metatranscriptome	126	N
F075397	Metagenome / Metatranscriptome	119	N
F083344	Metagenome / Metatranscriptome	113	N
F089397	Metagenome / Metatranscriptome	109	Y
F096498	Metagenome / Metatranscriptome	104	N
F098166	Metagenome / Metatranscriptome	104	N
F101842	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066616_1000545	Not Available	521
Ga0066616_1001265	All Organisms → Viruses → Predicted Viral	1302
Ga0066616_1002627	All Organisms → Viruses → Predicted Viral	2067
Ga0066616_1003184	Not Available	1468
Ga0066616_1003830	All Organisms → Viruses → Predicted Viral	1407
Ga0066616_1004091	Not Available	560
Ga0066616_1004320	Not Available	575
Ga0066616_1006021	All Organisms → Viruses → Predicted Viral	1512
Ga0066616_1007950	Not Available	1011
Ga0066616_1011090	All Organisms → Viruses → Predicted Viral	1862
Ga0066616_1013492	Not Available	522
Ga0066616_1017103	Not Available	540
Ga0066616_1020696	All Organisms → Viruses → Predicted Viral	1293
Ga0066616_1144674	Not Available	501
Ga0066616_1157578	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	574
Ga0066616_1160355	Not Available	589
Ga0066616_1163765	Not Available	641
Ga0066616_1175498	Not Available	535
Ga0066616_1177279	Not Available	639
Ga0066616_1180444	Not Available	547
Ga0066616_1183500	Not Available	2430
Ga0066616_1186556	Not Available	997
Ga0066616_1186624	Not Available	1098

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066616_1000545	Ga0066616_10005452	F098166	VITIVINSILTVKKGVFTMNILVSKDEEQSIYTTAMRFTMADGDMLLTATTEEIDKVGAWLGKNGLTGVYTDIEEDDFIECNDFMFTSSDMNINSDNHLTFIRLLK*
Ga0066616_1001265	Ga0066616_10012652	F067124	MKQSEMKMPKRVINYRDRVTQQEYNVDSKIVSTRPTHKVKSVEVIDGVEYYVFSI*
Ga0066616_1002627	Ga0066616_10026274	F062676	MRVKGKRIINNEDALEFANSIRGQYIISQALTIANGVLETYEIDDDVMRAEPSNRADMEFLLKAFPLYGIHEQANWKEDDDEESE*
Ga0066616_1003184	Ga0066616_10031841	F083344	MITTIKFTSDDLTMLRGVMACTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHFDGELPERGVIIPSIKIPFSVHTVIITIDDNKITVDKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
Ga0066616_1003184	Ga0066616_10031843	F098166	MNILVSKDEEQSIYTTAMRFTMADGDMLLTATTAEIDRLGEWLGKNGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNHLTFIRLLK*
Ga0066616_1003830	Ga0066616_10038303	F059353	MGKLSVADANELLDKGIITKDTLAKMQKDGLVSTRSKSAERYIQSDSGTWVTPIFYFRGLGGGKYTVEMTELRTEVNKVIEKYTVNKHEVVKLETKSRKNSKGANGK*
Ga0066616_1004091	Ga0066616_10040912	F029271	VDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
Ga0066616_1004320	Ga0066616_10043201	F075397	MKYWHKRVEVVSFFDLDQENQDIELKDDDNAEELAFLIAKDGEYWNLDSFMRTESGRYDGVMGLTNTSAIGVVLSCSGKSAVIQCFG*
Ga0066616_1004320	Ga0066616_10043202	F029271	QDIKELLDVDFRKDKFLENSYNNSPCFNYDAAKSYVADIHQFLSEKYGEAVIYNFTQEVESLRITTLKMYVESNIVSYQRFGAQK*
Ga0066616_1006021	Ga0066616_10060213	F067124	MKMPKRVINYRDRVTQQEYNVDSKIVSTRPTHKVKSVEMIDGVKYYVLST*
Ga0066616_1007950	Ga0066616_10079502	F029271	MSKLSDLQDIKELLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFIQEVESLRITTLKMYIESNIAAYRRFTIKTIDDSNKSYYSN*
Ga0066616_1011090	Ga0066616_10110901	F018265	MSMEKYTLRAVSITQNILELQKVNRELVTVRKIVTELEQRKMELISS*
Ga0066616_1011090	Ga0066616_10110903	F051476	MTHWKVKLIIKDKLHKAELFEKLSDARLWAMKEAKLAVSHTMFNKTDIVADITSHEFA*
Ga0066616_1011090	Ga0066616_10110904	F001048	MKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRIELLVNSRVRWELGPENFMKWDSCGYKDIPTLAKAYGIK*
Ga0066616_1013492	Ga0066616_10134922	F029271	MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYDTAESYVANIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESSIASYQRFRAQK*
Ga0066616_1017103	Ga0066616_10171032	F041248	MKGREGKHVRQESAINRTKATILVYEEGLKLGNDDEKKLLKKKIERAQTTVENTKKNMK*
Ga0066616_1020696	Ga0066616_10206961	F005429	LKRGGTISKMPLLLNTVGKGWRGESSEDTFDGGSPLVSWESIQPDKRFDTDDDDRKYWNKLNKRCDKLLKKLKVK*
Ga0066616_1144674	Ga0066616_11446742	F025857	VTKNIMTLHRVAPGCFFTSEEDTPINAIVGKKTSVPTNTPKPYYRTSELDEIPDNFAERMRKFKRAEVRTEEREIITPNGFAVSIAFNKGAYMVIPKEDL*
Ga0066616_1157578	Ga0066616_11575781	F061392	LQLKTFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
Ga0066616_1160355	Ga0066616_11603552	F089397	MTVIDYLIKKFDGVMIDDYGWEHYKVDGKDYDIRFDRSRMEWACDCKAFIFRYK
Ga0066616_1163765	Ga0066616_11637652	F051054	MRTIKLTTFNDLGDCDRQDVNDLISALVRMGYEVWMTDTFVCFNLGNEDVIKDEKNENNSD*
Ga0066616_1175498	Ga0066616_11754981	F101842	MMIESIIIAFSIRDDMFLSVALGALVVIGLRATKKVMDD*
Ga0066616_1177279	Ga0066616_11772791	F052275	VWDEPDKAPIATVDTRHCLGCKSLVEVPIEFHGGGLIEDPDVVPSFLNRCPDCNSSNVQSWDTKHSCPRCGEHMTSELAN*
Ga0066616_1180444	Ga0066616_11804441	F011155	MLDTAVDVVGNFDVLADNVFVLGQGAFGFLTEAKDSPYPWMIAAATLAGALPLALVFFGFGWIECS
Ga0066616_1180444	Ga0066616_11804443	F000615	ENIMCMIRCFYECSDGKLGWSEVVLSYEDDIAGFVKHWSTGGRMVITEHIDMV*
Ga0066616_1183500	Ga0066616_11835002	F001048	MKIVSTKQFWWRFNYLKRNGGVITVTNRTPEMDVKEYNRIELLVNKRVRWELGVEGFMKWDSCGVKDITTLARAYGIS*
Ga0066616_1186556	Ga0066616_11865562	F016206	MAQAKKTKKKVSKVMGEILKAPKKVEKTVEVAAKYVNETHWDTKEAFAAAIDKTGLSADQVNVNSEWDLYQSDTDGYRNHLKLEN*
Ga0066616_1186556	Ga0066616_11865563	F010879	MAQKRKVLKEVLFDDVEEKIEYDFLTRDQFFSKVPERPMSAHGIEMWEKYLQDPKGFQF*
Ga0066616_1186624	Ga0066616_11866241	F096498	MYDEINVDIKCPKCGSNEMDWQSKDYMCGLDMIDPDKVQEFYTHCDKCDTFTTYRRGAENDDAYTKCRAEPYSLDEVEKM