Sample 3300004595

Basic Information
IMG/M Taxon OID	3300004595 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0088397 \| Ga0008278
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	92326776
Sequencing Scaffolds	27
Novel Protein Genes	33
Associated Families	29

Dataset Contents

Total Genome Size

92326776

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → Synechococcus elongatus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → Synechococcus elongatus

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida

All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

All Organisms → Viruses → environmental samples → uncultured marine virus

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F001767	Metagenome / Metatranscriptome	638	Y
F004461	Metagenome / Metatranscriptome	437	Y
F006699	Metagenome / Metatranscriptome	366	Y
F009426	Metagenome / Metatranscriptome	318	Y
F009689	Metagenome / Metatranscriptome	314	Y
F011139	Metagenome / Metatranscriptome	294	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0008278_1016845	Not Available	1173	Open in IMG/M
Ga0008278_1031703	Not Available	524	Open in IMG/M
Ga0008278_1041986	All Organisms → Viruses → Predicted Viral	1602	Open in IMG/M
Ga0008278_1046832	Not Available	2812	Open in IMG/M
Ga0008278_1074086	Not Available	522	Open in IMG/M
Ga0008278_1094678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola	794	Open in IMG/M
Ga0008278_1158290	Not Available	539	Open in IMG/M
Ga0008278_1162172	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	788	Open in IMG/M
Ga0008278_1164730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	921	Open in IMG/M
Ga0008278_1183657	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	598	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008278_1016845	Ga0008278_10168451	F059360	MTLFKEVLVPANLVPAAAVTREGQALFVFTGRTESVDCNISFILKFRV*
Ga0008278_1017815	Ga0008278_10178152	F059360	MKKINFGCKVLSLKVIMTLFKEVVPANTRAAAAVKRGGQALFVMTGRKRFVDGKISFW*
Ga0008278_1031703	Ga0008278_10317032	F056191	VCEARVRHALTAEMFKTLPSWGSMHASVKLEGIDGRAPQERVEHVA*
Ga0008278_1041986	Ga0008278_10419862	F006699	MKMIRRYDYKCTVCSHIEEQWVDSSEDLSTCLECGETAQRIISPVSTKFKGFGWPDADDKWARDHERAASK*
Ga0008278_1046832	Ga0008278_10468321	F070259	MKVESLVIVNQHVTVNDLSNFAHTAHHARRVVTAGNTPLYST*
Ga0008278_1074086	Ga0008278_10740861	F056191	MCEARFRHALTAEMSETFPSGGSMHASVKLEGIDGRAPQERVEHV
Ga0008278_1094678	Ga0008278_10946781	F065812	KLLLRLNICGKPIANKYCEGKMKSTLERESKDLKPLRRKRWR*
Ga0008278_1137141	Ga0008278_11371411	F000049	MTFWQENYHFIKDVYDMRHTKMLEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLYREEVKKWLQQMLEILMAERAKEERKEQISKLDGLIERHESLVPNVLKTQVKVDLYWKCYAYGDELAPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKALNQLETKRS
Ga0008278_1158290	Ga0008278_11582901	F061006	RNPKENDSPKTEPFKRIDQLLPKKPGQSPEDRANDIDNTLTWLRNRGVDEPSFGPEEPFKKAQNLPMPDSRTPEQKATDLDNVLNWVRNPKENDTPQTEPFKKIDQLLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPESEPTSPFEKLNSIPIDRRTPEHKAKDVEDILNWKRNPKEN
Ga0008278_1162172	Ga0008278_11621721	F026581	EEVEAARPKAANFRKYAAAIAGAWAVLFVAAVLIVGNASSSQESVLLSGPQRTQMLEFKEFEPERNVFEEFDAGFEPEMKFEYDLMNEADFPSINIASGVDGDEVTEGIPDPYADQAPHDPVPEMVYTQDPPYDTSVVEIGEKVFGEPFHEYTHAEEGEAVMGKEYEAVPFDKTLNSVPEPNPSREWEILDINNELHY*
Ga0008278_1164730	Ga0008278_11647303	F085649	YWGAEAGREVTLTGFTVQYMNADTYEDCDEGDEGAVIGHVAVEHDSTWDVYTDSAFSEAAANYTNIMGLDFTEQGMQQDNLASMEV*
Ga0008278_1167598	Ga0008278_11675981	F000237	IYLKNYVTAESDGLLGGYAFFFHYIIALGISLSATHLSDITLTIVANIFSLFNNVYKTYYIMFTNKHLNTDQLTRFMILHYFTPYYLYLVKLHVMFCHESWDTDSGENTYEDKSGSYVSFYDAFLKEIQDAYTIFIFSYFFMHHFDGGTVNYFFFERNISELDEIRFYGVAPHYFRPFMGILTISPTHYEGLMWFALLVLLAFLPVINTFYNPYNRYQSVIPIQNSLQSTFFIIFMMSLYCASSMLPCGRYYYEPEGGYVGNPVKFSYQYGYLYLIIIHHLDALDHIFNFTQNLKRRYTQNLRVKRTRF
Ga0008278_1180439	Ga0008278_11804391	F000023	HSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQDSLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHK
Ga0008278_1183657	Ga0008278_11836572	F011139	MGILVISPTHYEGLMWMGLFFILLAFLPIFYNFYNVYHKYVATIPMQNSLLQTSFFIFFMMSLYCTASMLPCGRYYYEPEGGYVGNP*
Ga0008278_1185851	Ga0008278_11858511	F020014	LLKTSYRDEPRPEYAPKKNSVNNPRAASPPTVATIQRGTLPISLILIKFF*
Ga0008278_1189854	Ga0008278_11898541	F020542	HRITDSIWYQKDTAISIQEDITGVASTHTYKLLRVLRRDVVDWVGQRDPKGALHSPESQVFLYPRNQFVRIDDEGRWISLMIWISPTGLQKWEQVLMDVGLPIGTPWVEDYRVTETDTVIIDDRWAVRVSLREPYRTSGVDWIEGIGPTQNSLLPGYDGWQTTYFLKKHFIY*
Ga0008278_1195311	Ga0008278_11953111	F051950	LNFNVGFSTTRSDVLVHLSQQY*FFAFLCFYYLFSARVVRYRSLKMRPKISTSFRPHGKGDFLAGVIPTICMNILVNSNFILRLLEQNEASLFTVRVRARQYVYKFELKNFTDILTAPKNVGFNRTVNTFGDLQVAEDYLYLLQLRSQNNVKSY*AEVLKTAGDVKKNHIVAPQEQLSLEMTNQSKMNLVNNKVNSLNLNINLNLN
Ga0008278_1201120	Ga0008278_12011201	F085184	ANLQRLHALALKTNLPGATQKLALINQRLAVYSETSEVAKILMEMLDDIEQRLKIIDTVDEQAKKLVEDTEAKMFHWEQQLVALSNAADKSKEKQSEAQLQREKLNGNKKVANAEYDDEKAAYTLMIPPYEKEIYVITMIKIKINEHCDKLANGEESTFGERR*
Ga0008278_1201371	Ga0008278_12013711	F001767	HFRTMVYSEPLLPKPATAGRGAHSKASIFYGADEYLTELAKKQEADQEIMALKGAMPDGGDPHAQGGQKSSGDKMLAVQKDQGNRSLKTGRLFPTPNKPDPMPADLAFLFTKITPEQMMYMWRVLTLIFVGQCLMVLAYAAALRFFPDYWWTCTMSFGLPFVYIAVQHIYIDHDVMHGATFPPYEWQKYLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYWMQQWSDKWYCLMLTVPFIPLLHFIGLNDTGSAFALEWWCHFPDSGAGGKCNKEMWSKWIPRRFKHNMFNLSLWACVWLVGTWPLGRPMSEGWRFMLTVSCFARFGYSAAWIFITNFNHSIPWNRFLANDPDRSWPTLHAVMALILGGRHRWNEMLFH
Ga0008278_1203604	Ga0008278_12036041	F009689	VEDLATTLARHAKERQDLADEREVIKEILRFLGVLHDVKATDKSIAAGGKDSEIDPETGVSEVKATTTASLKASIKRLQHLVLKTKLPGSTQQLAQIQKLPVYSETEEVAKVLKDMLADLSTRLSVLEEVDAKAQKLVDDTKAKLVEWQAKLVKLADDKDKAKEKMMQEKLQREQLAGAKDVAQSNYNTESDAYVKVITPYEREIYVITMIKIKINEH
Ga0008278_1207671	Ga0008278_12076711	F016275	VPAVGVRDIYALEFQIFKDTRWSFFYIFSVVVFMLHACWGWKKVTPALGIPKGHIKRVELMGYAIMIAMGTVYISFPLYVMFTQPFAGHEMDIQVPADRVGA*
Ga0008278_1209624	Ga0008278_12096241	F006699	CLACEHVEEHWVTDDDRFVTCKECGETAQRIISPISTKFEGFGWPDADDKWARDHERAANTN*
Ga0008278_1217873	Ga0008278_12178733	F099333	DIEIYAIPQLSDEEGREFIPAFKMDASGKAIPQLSKDEMRKMLKDDMMYIL*
Ga0008278_1220707	Ga0008278_12207071	F030135	ELAKLSSFTDIGHSTFAGCQFPDAILPGWEAFDLVAGPLS*
Ga0008278_1223537	Ga0008278_12235371	F009426	PEIRLAREIEPTAAKVNKHVKPSLDMIPSEISYTINLFMTTGPCVISAGAARETLFEGKADYCMIVCE*
Ga0008278_1226288	Ga0008278_12262882	F082866	MHHQLPNHKRTLNLLFRKASGSGKICVLSQIEPQTPRLVVSFRQYLQVSILQSYSPQNPKPYGFPGDAIVVDRF*
Ga0008278_1228795	Ga0008278_12287952	F072381	VAGTDLMSDFSEFQLWYDINTDQLRHRISTKLGVNVAYPEFWVSNNA*
Ga0008278_1229204	Ga0008278_12292041	F017489	TWPLGRPLSEGWRFMLIVSMWARLGYGLAWMMITNFNHSIPWNRFLANDPDRSWPTLHAIMAVILGGRHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDASVEVLARGLWKANGDEETEMQKNQRKRSLLIKQRKGQ*
Ga0008278_1230696	Ga0008278_12306961	F061006	KRNPRENDSPETEPFKRIDQLLPEKPGQSPEDRANDIDNVLQWMRNRGVDQPEFKDEPFQKAQQMPMPDSRTPEQKAKDVDDVLQWMRNPRENESPSTEPFKRIDQLLPEKPGQTPEDRAKDIDNALTWVRNRGVDQPEFEPTPTFDKFNSIPLDRRTPEQKARDVENVLNWKRNPRENDSPETEPFKRIDQLL
Ga0008278_1234307	Ga0008278_12343071	F065837	MSLDVSALSAFNNEVAGELLPKIVYGGSTMEYITVKEGVKHQEPINLMEVDLQVQYGTCVSTPSGSLTYSQRNITVCPRTSFDGICLKDMDKYYLGVADLEPGSYNTTFKTAQVYSDLLVNQFQKSNDAFLWNGDAGCTDGGTGLIATISGSTAGVVTAGTGDATLANLDTMIAALSDDVADREDITVFMSVSKFRTFIAALRSANNYYF
Ga0008278_1240360	Ga0008278_12403601	F069331	MSRYFKEIEENMDANFLHKLDKARSIAGLPFKINSAYRSPEHPLSIKNPSSSHIK
Ga0008278_1243112	Ga0008278_12431121	F000306	KHNCSVSDVTEIADVCTPAFETVCNNVDLAIKRIVDGEYCYDVARTVCTESIEEIPNEVCTYTYNKKYEDTTAKTVEVTFTTETNVQMVTVCQPGYQGYGGYGHQGYGNQYCKEVAQTTQYNVPVVTPVDVPVRVGYPEAVKTCVNKPISLPRIACEVVTEQKCVAQPEVEEATVPVEKCETRLAAPACQQVELTLPKQACVELVYGYAEDAHKEPAYAPEPAYAPEQ*
Ga0008278_1247019	Ga0008278_12470191	F004461	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGASAATIGEKEMTVTTYKWSFLNCKNALETSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTNGALTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*

Showing 1 to 33 of 33 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004595: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences