3300004595: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300004595
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088397 | Ga0008278
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92326776
• Sequencing Scaffolds: 27
• Novel Protein Genes: 33
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → Synechococcus elongatus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F001767	Metagenome / Metatranscriptome	638	Y
F004461	Metagenome / Metatranscriptome	437	Y
F006699	Metagenome / Metatranscriptome	366	Y
F009426	Metagenome / Metatranscriptome	318	Y
F009689	Metagenome / Metatranscriptome	314	Y
F011139	Metagenome / Metatranscriptome	294	Y
F016275	Metagenome / Metatranscriptome	248	Y
F017489	Metagenome / Metatranscriptome	240	Y
F020014	Metagenome / Metatranscriptome	226	Y
F020542	Metagenome / Metatranscriptome	223	N
F026581	Metagenome / Metatranscriptome	197	Y
F030135	Metagenome / Metatranscriptome	186	Y
F051950	Metagenome / Metatranscriptome	143	Y
F056191	Metagenome / Metatranscriptome	138	Y
F059360	Metagenome / Metatranscriptome	134	Y
F061006	Metagenome / Metatranscriptome	132	Y
F065812	Metagenome / Metatranscriptome	127	Y
F065837	Metagenome / Metatranscriptome	127	Y
F069331	Metagenome / Metatranscriptome	124	Y
F070259	Metagenome / Metatranscriptome	123	Y
F072381	Metagenome / Metatranscriptome	121	Y
F082866	Metagenome / Metatranscriptome	113	Y
F085184	Metagenome / Metatranscriptome	111	N
F085649	Metagenome / Metatranscriptome	111	Y
F099333	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008278_1016845	Not Available	1173
Ga0008278_1031703	Not Available	524
Ga0008278_1041986	All Organisms → Viruses → Predicted Viral	1602
Ga0008278_1046832	Not Available	2812
Ga0008278_1074086	Not Available	522
Ga0008278_1094678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas vasicola	794
Ga0008278_1158290	Not Available	539
Ga0008278_1162172	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	788
Ga0008278_1164730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	921
Ga0008278_1183657	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	598
Ga0008278_1185851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → Synechococcus elongatus	855
Ga0008278_1189854	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	548
Ga0008278_1195311	Not Available	655
Ga0008278_1201120	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	617
Ga0008278_1201371	All Organisms → cellular organisms → Eukaryota → Sar	1180
Ga0008278_1207671	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	510
Ga0008278_1209624	Not Available	974
Ga0008278_1217873	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	586
Ga0008278_1220707	Not Available	525
Ga0008278_1223537	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	541
Ga0008278_1226288	All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1133
Ga0008278_1228795	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	690
Ga0008278_1229204	All Organisms → cellular organisms → Eukaryota → Sar	593
Ga0008278_1230696	Not Available	586
Ga0008278_1234307	Not Available	1038
Ga0008278_1240360	All Organisms → Viruses → environmental samples → uncultured marine virus	689
Ga0008278_1247019	All Organisms → Viruses → Predicted Viral	1006

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008278_1016845	Ga0008278_10168451	F059360	MTLFKEVLVPANLVPAAAVTREGQALFVFTGRTESVDCNISFILKFRV*
Ga0008278_1017815	Ga0008278_10178152	F059360	MKKINFGCKVLSLKVIMTLFKEVVPANTRAAAAVKRGGQALFVMTGRKRFVDGKISFW*
Ga0008278_1031703	Ga0008278_10317032	F056191	VCEARVRHALTAEMFKTLPSWGSMHASVKLEGIDGRAPQERVEHVA*
Ga0008278_1041986	Ga0008278_10419862	F006699	MKMIRRYDYKCTVCSHIEEQWVDSSEDLSTCLECGETAQRIISPVSTKFKGFGWPDADDKWARDHERAASK*
Ga0008278_1046832	Ga0008278_10468321	F070259	MKVESLVIVNQHVTVNDLSNFAHTAHHARRVVTAGNTPLYST*
Ga0008278_1074086	Ga0008278_10740861	F056191	MCEARFRHALTAEMSETFPSGGSMHASVKLEGIDGRAPQERVEHV
Ga0008278_1094678	Ga0008278_10946781	F065812	KLLLRLNICGKPIANKYCEGKMKSTLERESKDLKPLRRKRWR*
Ga0008278_1137141	Ga0008278_11371411	F000049	MTFWQENYHFIKDVYDMRHTKMLEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLYREEVKKWLQQMLEILMAERAKEERKEQISKLDGLIERHESLVPNVLKTQVKVDLYWKCYAYGDELAPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKALNQLETKRS
Ga0008278_1158290	Ga0008278_11582901	F061006	RNPKENDSPKTEPFKRIDQLLPKKPGQSPEDRANDIDNTLTWLRNRGVDEPSFGPEEPFKKAQNLPMPDSRTPEQKATDLDNVLNWVRNPKENDTPQTEPFKKIDQLLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPESEPTSPFEKLNSIPIDRRTPEHKAKDVEDILNWKRNPKEN
Ga0008278_1162172	Ga0008278_11621721	F026581	EEVEAARPKAANFRKYAAAIAGAWAVLFVAAVLIVGNASSSQESVLLSGPQRTQMLEFKEFEPERNVFEEFDAGFEPEMKFEYDLMNEADFPSINIASGVDGDEVTEGIPDPYADQAPHDPVPEMVYTQDPPYDTSVVEIGEKVFGEPFHEYTHAEEGEAVMGKEYEAVPFDKTLNSVPEPNPSREWEILDINNELHY*
Ga0008278_1164730	Ga0008278_11647303	F085649	YWGAEAGREVTLTGFTVQYMNADTYEDCDEGDEGAVIGHVAVEHDSTWDVYTDSAFSEAAANYTNIMGLDFTEQGMQQDNLASMEV*
Ga0008278_1167598	Ga0008278_11675981	F000237	IYLKNYVTAESDG*LLGGYAFF*FHYIIALGISLSATHLSDITLTIVANIF*SLFNNVYKTYYIMFTNKHLNTDQLTRFMILHYFTP*YYLYLVKLHVMFCHESWDTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TIFIFSYFFMHHFDGGTVNYFFFER*NISELDEIRFYGVAPH*YFRPFMGILTISPTHYEGLMWFAL*LVLLAFLPVINTFYNPYNRYQSVIPIQNS*LQSTFFIIFMMSLYCASSMLPCGRYYYEPEGGYVGNP*VKFSYQYGYLYLI*IIHHLDALDH*IFNFTQNLKRRYTQNLRVKRTRF
Ga0008278_1180439	Ga0008278_11804391	F000023	HSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQDSLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHK
Ga0008278_1183657	Ga0008278_11836572	F011139	MGILVISPTHYEGLMWMGLFFILLAFLPIFYNFYNVYHKYVATIPMQNSLLQTSFFIFFMMSLYCTASMLPCGRYYYEPEGGYVGNP*
Ga0008278_1185851	Ga0008278_11858511	F020014	LLKTSYRDEPRPEYAPKKNSVNNPRAASPPTVATIQRGTLPISLILIKFF*
Ga0008278_1189854	Ga0008278_11898541	F020542	HRITDSIWYQKDTAISIQEDITGVASTHTYKLLRVLRRDVVDWVGQRDPKGALHSPESQVFLYPRNQFVRIDDEGRWISLMIWISPTGLQKWEQVLMDVGLPIGTPWVEDYRVTETDTVIIDDRWAVRVSLREPYRTSGVDWIEGIGPTQNSLLPGYDGWQTTYFLKKHFIY*
Ga0008278_1195311	Ga0008278_11953111	F051950	LNFNVGFSTTRSDVLVHLSQ*QY***F*FAFL*CFYYLFSARVVRYRSLKMRPKISTSFRPHGK*GDFLAGVIPTI*CMNILVNSNFILRLLE*QNEASLFTVRVRARQ*Y*VYKFELKNFTDILTAPKNVGFNR*TVNTFGDLQVAEDYLYLLQLRSQNN*VKSY*AEVLKTAGDVKKNHIVAPQEQLSLEMTNQSKMNLVNNKVNSLNLNINLNLN
Ga0008278_1201120	Ga0008278_12011201	F085184	ANLQRLHALALKTNLPGATQKLALINQRLAVYSETSEVAKILMEMLDDIEQRLKIIDTVDEQAKKLVEDTEAKMFHWEQQLVALSNAADKSKEKQSEAQLQREKLNGNKKVANAEYDDEKAAYTLMIPPYEKEIYVITMIKIKINEHCDKLANGEESTFGERR*
Ga0008278_1201371	Ga0008278_12013711	F001767	HFRTMVYSEPLLPKPATAGRGAHSKASIFYGADEYLTELAKKQEADQEIMALKGAMPDGGDPHAQGGQKSSGDKMLAVQKDQGNRSLKTGRLFPTPNKPDPMPADLAFLFTKITPEQMMYMWRVLTLIFVGQCLMVLAYAAALRFFPDYWWTCTMSFGLPFVYIAVQHIYIDHDVMHGATFPPYEWQKYLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYWMQQWSDKWYCLMLTVPFIPLLHFIGLNDTGSAFALEWWCHFPDSGAGGKCNKEMWSKWIPRRFKHNMFNLSLWACVWLVGTWPLGRPMSEGWRFMLTVSCFARFGYSAAWIFITNFNHSIPWNRFLANDPDRSWPTLHAVMALILGGRHRWNEMLFH
Ga0008278_1203604	Ga0008278_12036041	F009689	VEDLATTLARHAKERQDLADEREVIKEILRFLGVLHDVKATDKSIAAGGKDSEIDPETGVSEVKATTTASLKASIKRLQHLVLKTKLPGSTQQLAQIQKLPVYSETEEVAKVLKDMLADLSTRLSVLEEVDAKAQKLVDDTKAKLVEWQAKLVKLADDKDKAKEKMMQEKLQREQLAGAKDVAQSNYNTESDAYVKVITPYEREIYVITMIKIKINEH
Ga0008278_1207671	Ga0008278_12076711	F016275	VPAVGVRDIYALEFQIFKDTRWSFFYIFSVVVFMLHACWGWKKVTPALGIPKGHIKRVELMGYAIMIAMGTVYISFPLYVMFTQPFAGHEMDIQVPADRVGA*
Ga0008278_1209624	Ga0008278_12096241	F006699	CLACEHVEEHWVTDDDRFVTCKECGETAQRIISPISTKFEGFGWPDADDKWARDHERAANTN*
Ga0008278_1217873	Ga0008278_12178733	F099333	DIEIYAIPQLSDEEGREFIPAFKMDASGKAIPQLSKDEMRKMLKDDMMYIL*
Ga0008278_1220707	Ga0008278_12207071	F030135	ELAKLSSFTDIGHSTFAGCQFPDAILPGWEAFDLVAGPLS*
Ga0008278_1223537	Ga0008278_12235371	F009426	PEIRLAREIEPTAAKVNKHVKPSLDMIPSEISYTINLFMTTGPCVISAGAARETLFEGKADYCMIVCE*
Ga0008278_1226288	Ga0008278_12262882	F082866	MHHQLPNHKRTLNLLFRKASGSGKICVLSQIEPQTPRLVVSFRQYLQVSILQSYSPQNPKPYGFPGDAIVVDRF*
Ga0008278_1228795	Ga0008278_12287952	F072381	VAGTDLMSDFSEFQLWYDINTDQLRHRISTKLGVNVAYPEFWVSNNA*
Ga0008278_1229204	Ga0008278_12292041	F017489	TWPLGRPLSEGWRFMLIVSMWARLGYGLAWMMITNFNHSIPWNRFLANDPDRSWPTLHAIMAVILGGRHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDASVEVLARGLWKANGDEETEMQKNQRKRSLLIKQRKGQ*
Ga0008278_1230696	Ga0008278_12306961	F061006	KRNPRENDSPETEPFKRIDQLLPEKPGQSPEDRANDIDNVLQWMRNRGVDQPEFKDEPFQKAQQMPMPDSRTPEQKAKDVDDVLQWMRNPRENESPSTEPFKRIDQLLPEKPGQTPEDRAKDIDNALTWVRNRGVDQPEFEPTPTFDKFNSIPLDRRTPEQKARDVENVLNWKRNPRENDSPETEPFKRIDQLL
Ga0008278_1234307	Ga0008278_12343071	F065837	MSLDVSALSAFNNEVAGELLPKIVYGGSTMEYITVKEGVKHQEPINLMEVDLQVQYGTCVSTPSGSLTYSQRNITVCPRTSFDGICLKDMDKYYLGVADLEPGSYNTTFKTAQVYSDLLVNQFQKSNDAFLWNGDAGCTDGGTGLIATISGSTAGVVTAGTGDATLANLDTMIAALSDDVADREDITVFMSVSKFRTFIAALRSANNYYF
Ga0008278_1240360	Ga0008278_12403601	F069331	MSRYFKEIEENMDANFLHKLDKARSIAGLPFKINSAYRSPEHPLSIKNPSSSHIK
Ga0008278_1243112	Ga0008278_12431121	F000306	KHNCSVSDVTEIADVCTPAFETVCNNVDLAIKRIVDGEYCYDVARTVCTESIEEIPNEVCTYTYNKKYEDTTAKTVEVTFTTETNVQMVTVCQPGYQGYGGYGHQGYGNQYCKEVAQTTQYNVPVVTPVDVPVRVGYPEAVKTCVNKPISLPRIACEVVTEQKCVAQPEVEEATVPVEKCETRLAAPACQQVELTLPKQACVELVYGYAEDAHKEPAYAPEPAYAPEQ*
Ga0008278_1247019	Ga0008278_12470191	F004461	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGASAATIGEKEMTVTTYKWSFLNCKNALETSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTNGALTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*