3300004449: Marine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12)

Overview

Basic Information

• IMG/M Taxon OID: 3300004449
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111382 | Gp0110219 | Ga0065203
• Sample Name: Marine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12)
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 101858732
• Sequencing Scaffolds: 42
• Novel Protein Genes: 52
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	27
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	10
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine benthic feature → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Galveston Bay, USA
• Coordinates
  • Lat. (^o): 29.5
  • Long. (^o): -94.76
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F001607	Metagenome / Metatranscriptome	664	Y
F001614	Metagenome / Metatranscriptome	663	Y
F002151	Metagenome / Metatranscriptome	589	Y
F005882	Metagenome / Metatranscriptome	387	Y
F008886	Metagenome / Metatranscriptome	326	Y
F014681	Metagenome / Metatranscriptome	261	Y
F016646	Metagenome / Metatranscriptome	245	Y
F017291	Metagenome / Metatranscriptome	241	Y
F020468	Metagenome / Metatranscriptome	224	Y
F030418	Metagenome	185	Y
F030440	Metagenome / Metatranscriptome	185	N
F038153	Metagenome	166	Y
F038915	Metagenome	165	Y
F049611	Metagenome / Metatranscriptome	146	Y
F056432	Metagenome / Metatranscriptome	137	Y
F057206	Metagenome / Metatranscriptome	136	Y
F058963	Metagenome / Metatranscriptome	134	Y
F058965	Metagenome / Metatranscriptome	134	Y
F059061	Metagenome / Metatranscriptome	134	Y
F063490	Metagenome	129	Y
F082626	Metagenome	113	Y
F091054	Metagenome	108	Y
F094909	Metagenome	105	Y
F097383	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065203_1439787	Not Available	509
Ga0065203_1440653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518
Ga0065203_1442358	Not Available	537
Ga0065203_1446414	Not Available	590
Ga0065203_1451942	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	706
Ga0065203_1452853	Not Available	734
Ga0065203_1456955	Not Available	917
Ga0065203_1457082	Not Available	925
Ga0065203_1457369	Not Available	945
Ga0065203_1457442	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	950
Ga0065203_1457443	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	950
Ga0065203_1457497	Not Available	954
Ga0065203_1457660	Not Available	967
Ga0065203_1458184	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1009
Ga0065203_1458500	Not Available	1037
Ga0065203_1458671	Not Available	1053
Ga0065203_1458721	Not Available	1058
Ga0065203_1458794	Not Available	1064
Ga0065203_1459269	Not Available	1122
Ga0065203_1459300	Not Available	1125
Ga0065203_1459333	All Organisms → Viruses → Predicted Viral	1128
Ga0065203_1459616	Not Available	1161
Ga0065203_1460071	Not Available	1224
Ga0065203_1460191	Not Available	1245
Ga0065203_1461184	All Organisms → Viruses → unclassified viruses → Virus sp.	1430
Ga0065203_1462042	Not Available	1688
Ga0065203_1462059	Not Available	1693
Ga0065203_1462259	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1784
Ga0065203_1462676	Not Available	1981
Ga0065203_1462721	Not Available	2005
Ga0065203_1462860	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2091
Ga0065203_1462897	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2116
Ga0065203_1462926	Not Available	2130
Ga0065203_1462975	Not Available	2163
Ga0065203_1462988	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2170
Ga0065203_1463006	All Organisms → Viruses → unclassified viruses → Virus sp.	2181
Ga0065203_1463048	Not Available	2217
Ga0065203_1463071	Not Available	2230
Ga0065203_1463095	Not Available	2250
Ga0065203_1463106	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2257
Ga0065203_1463117	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2262
Ga0065203_1463839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3188

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065203_1439787	Ga0065203_14397871	F017291	MPVIANNISLTAGSSSVNVFDNTNYQFVNEGTELRVSAAVVGANDGIQGANVNYRFTINNTEFADDAIVPALVTGE
Ga0065203_1440653	Ga0065203_14406531	F094909	LIFGDFMGTVKRSDLMFDFDTSSDYFRIYEGQRIQALSLPVKSRRLSTLLAEIESHFQRGWRLLDAGEWTEADFNQVFLLSREISNEIMALRQEYQAAMGEFESRHSPGDSQLTQ*
Ga0065203_1442358	Ga0065203_14423581	F091054	MDVRGNGQEIKLRRIILKRILGILGLALLLAALLTVFVTGSIMAASDNAKGAQNHYNYQECPGGEPYGDDIPNLWGEPGPHGQGNAA*
Ga0065203_1446414	Ga0065203_14464142	F058963	VVTKAALRKTKSTIRKLKNMCDMYDDLRPSARRRTPMRRATRASTTLIKN*
Ga0065203_1451942	Ga0065203_14519421	F008886	FGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG*
Ga0065203_1452853	Ga0065203_14528532	F014681	MNLRSLKDDTLGMVDLGVVLMIGISFIGLMVVAYIIYTIRDSLITTSTSSVVNNTIANITSGFDDAVGLLLLAITITILAVAIMALMMLRTR*
Ga0065203_1456955	Ga0065203_14569552	F000713	ILQGTTYEYVDPGTRLVVAAAESTGTYSGNVIMNFTVNNAEFSRDAAVSEKVSGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNNDASSVDIEVAIFIGG*
Ga0065203_1457082	Ga0065203_14570822	F020468	ILAGTTYEYVGPGTRLVIAAAAQDATGSLAQGVDSETVMNFQVNNAEFARDANVSLAGGGEPIGWKGGYVMNDMVTTAAERNRPIVTFTNNSSATREIDVAIFIGG*
Ga0065203_1457369	Ga0065203_14573692	F057206	MNILIYVSLFVCFFSLFVSCIAIARVAKFTRSVHGLDWEAVATVLGDVATVKRSITRLNGRLNGMDNAQPTDFDWKQQAARVLAEPQQERPRGG*
Ga0065203_1457442	Ga0065203_14574421	F000713	LVKKNITVAAGATSDQILQGTTYEYVDPGTRIVVAAAESTGTYSGNAVMNFTVNNAEFAKDAAVSEKVSGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNNDASSVNIEVAVFIGG*
Ga0065203_1457443	Ga0065203_14574431	F000713	LVKKNITVAAGATSDQILQGTTYEYVDPGTRIVVAAAEATGTYSGNAVMNFTVNNAEFAKDAAVSEKVSGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNNDASSVDIEVAVFIGG*
Ga0065203_1457497	Ga0065203_14574971	F057206	MNYVIYGLIFASILNIIGLYIAIARVAEFRKSVHGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKEQAARTLAQPEPMKQVGG*
Ga0065203_1457660	Ga0065203_14576602	F020468	MPLVKKDISLAAGATSDQILAGTTYEYVGPGTRLVVAATAGDGAGGIAADDDTEVVMNFNVNNAEFARDASVSPAISGEAFGWKGNYVMNDMVTTATERNRPIITFTNNSAAARNVKVAVFIGG*
Ga0065203_1458184	Ga0065203_14581843	F000713	DQILQGTTYEYVDPGTRLVVAAAEATGTYSGNVVMNFTVNNAEFSRDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG*
Ga0065203_1458500	Ga0065203_14585003	F063490	MMMQFFGQYGGHLCGFGGFLAAIAAVLYARARVAEFERSVRDLDWQQVSELSLDVAKLKKASQKW
Ga0065203_1458597	Ga0065203_14585972	F017291	MPVLANNLSLTAGSSSVNVFDNTNYQFVNEGTEIRVSAAVVGANDGIQGANVNYRFTINNTEFADD
Ga0065203_1458620	Ga0065203_14586202	F017291	MPVLANNLSLTAGSSSVNVFDNTNYQFVNEGTELRVSAAVVGANDGVQGANVNYRFTINNTEFADD
Ga0065203_1458671	Ga0065203_14586711	F063490	MMQIFAQYAGLIAGFGGFLTAIAALLYARARVAEFEKSVRDLDWQQVSELSLDVAKLKKASQKW
Ga0065203_1458721	Ga0065203_14587212	F016646	DDAIVPALVTGQPFTDGAAAYRTNSVIATGQARNRPLLVFRNQTSGTLVVKYYIFISQQA
Ga0065203_1458794	Ga0065203_14587941	F030440	FAYTRARLGKLERALGDLDWEALAGLVGDVAVLKRTIQKLNMRLNGMETADPMAALAKLPQLQQNVTPMAAVKKRGG*
Ga0065203_1459269	Ga0065203_14592691	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAESTGTYSGNVVMNFTVNNAEFSRDAAVSEKVSGEAFGWNNTGYVMNDMVTTGQVRNRPVVTFTNND
Ga0065203_1459300	Ga0065203_14593002	F038153	MAIFGGLGKALGLGSAQEFVGGIVEPIFGPTAGRIAGTAAGTISTGISGLGQEVDVSAPPAGVDAPATVAPVSQTSQLRIPPSAQGFGGPMPQQAFIGGAGLGALATQGIGAATRLLSRPGVGGLVGGLGAGAVVDFFIDQFGQQKKLVITRKMQRDVKKLFMMSGGDFNMTAELYRMATGRSITGEQVVKIITKTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPKRRAPARRRTMSTSITQVK*
Ga0065203_1459333	Ga0065203_14593332	F005882	VAKVILATKDLDWDAVANMTGDLATTKKTIQTLNNRINGMHSPKIAEQELMMQLMANRNQKLNGKIVGG*
Ga0065203_1459616	Ga0065203_14596161	F020468	MPLVKKHLSLAAGATSEQVLSGTTYEYVGPGTRLVVAAAAQDATGSLAQGVDSEVNMNFNVNNAEFARDARVSLAGGGEPVGWKGGYVMNDMVTTAAERNRPIITFTNNSAATREIDVAIFIGG*
Ga0065203_1460071	Ga0065203_14600711	F017291	MPVLANNVSLTAGSSSVNVFDNTNYQFVNEGTELRVSAAVVGANDGIQGANVNYRFTINNTEFADDAIVPAL
Ga0065203_1460071	Ga0065203_14600713	F056432	AALLYARARVAEFERSVSDLDWQQVSELSLDVSKLKKAAQKWQNNANAQEKVSQKDLIERALMERMMQQNSIVQPIRKVEM*
Ga0065203_1460191	Ga0065203_14601911	F001614	TYGGLICGFGGFLTAIASLLYARARVAEFEASVRDLDWQQVSELSLDVAKLKKAAQKWQNNANAQEKVSQKDLIERALMERMMQQNSTVQPIRKVEM*
Ga0065203_1460191	Ga0065203_14601913	F017291	MPVLANNVSLTAGSSSVNVFDNTNYQFVNEGTEIRVSAAVVGANDGVQGSNVNYRFTINNTEFA
Ga0065203_1461184	Ga0065203_14611843	F059061	GLRETGGFISDVFASGIPQLFGRTRPPGIGQQPAVTTVTNVGAQESQGSGSIQAGVGTVLPSLVSGARGLLKSPLGQLALGTGTGVALSGLGGQPSGMRITRKMKSQARTVLNMTGGNLSAAAEILGVDENTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRATTRRRSPMKRASTTTLIKN*
Ga0065203_1462042	Ga0065203_14620422	F020468	MPLVKKELTLAAGATSEQILAGTTYEYVGPNTRLVVAAATDDGTVGTVSNLAQPGVTMNFNVNNAEFARDASVSGQVEGEPFGWKGSYVMNDMVTTAVDRNRPIITFTNTTASLRRVNVAVFIGG*
Ga0065203_1462059	Ga0065203_14620592	F020468	MPLVKKTIEIAAGATSEQVLAGTTYEYVGPNTRLVVAAGAIAQVNLFDAQNASEVVMNFNVNNAEFARDAEVSPMVTGEAFGWKGNYVMNDMITTAIERNRPIITFTNNSAATVIVHVAVFIGG*
Ga0065203_1462259	Ga0065203_14622591	F058965	MAFLGDFGKIFLGGARTGDVVTTLTGNPIIGASAQRGADLIGRIPSRGGTQQGQSVAVSQATQTTPQENQQSGTGGSQNVIIGLSDMGGGGFENVYSSQRPSMQAQNVGLPAIAGGAMAAGRGLYGLLFGGAAIAAPMIIDAFTGKPKKLRVTRKLQRDVKNAVMLLGIETVASQLGVEPEIVVYIMTKKIRNDGNYVTKAAVRKTRQTVRKMRTMCDLYDDLRPAAKRSPVRRRAATTKVTQIRN*
Ga0065203_1462259	Ga0065203_14622592	F000713	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAEATGTYSGNVVMNFTVNNAEFSRDVAVSEKVSGEAFGWNNTGYVLNDMVTTGQVRNRPVVTFTNNDASSVDIEVAIFIGG*
Ga0065203_1462676	Ga0065203_14626761	F082626	MNEKEQILVETVMDMLSGTAENMIRDPYHAPALWLIENWWHTLNAALQVGDHLDNKANSFEATDQTESEKRDKDIQPDESFEV*
Ga0065203_1462721	Ga0065203_14627212	F001607	MPVLANNISLTAGSSSVNVFDNTNYQFVNEGTELRVSAAVVGANDGVQGSNVNFRFTINNTEFADDAIVPALVTGQPFTDGAASYRTNSVIATGQARNRPLLVFRNQTAGTLIVKYYVFISQQA*
Ga0065203_1462860	Ga0065203_14628602	F097383	MSIIFAFYVSMACNLAVFGMFLYVIARVTKFSKSLKGLDWQAIADITGDIGAVKRSIQRLNNRLNGLEKTATTPDALAELALMHQQQQQNVTPLQQPQRATGG*
Ga0065203_1462860	Ga0065203_14628604	F000713	MPLVKKNITVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTGTYSGNVTMDFKVNNTEFSNDVAVSEKVSGEAFGWNNTGYVLNDMITTGAERNRPVITFTNSDASSVTVEVAIFIGG*
Ga0065203_1462897	Ga0065203_14628972	F000713	MPLVKKNITVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTGTYSGNVTMDFKVNNTEFSNDVSVSEKVSGEAFGWNNTGYVLNDMVTTGAERNRPVITFTNNDASSVDIEVAIFIGG*
Ga0065203_1462926	Ga0065203_14629264	F000713	MPLVKKNLTIAAGATSDQVLQGTTYEYVDPGTRIVVAAAESTGTYSGNGVMNFTVNNAEFAKDAALSEKVSGEAFGWNNTGYVMNDMVTTGQVRNRPVITFTNNDASSIDVEVAVFIGG*
Ga0065203_1462975	Ga0065203_14629752	F020468	MPLVKKQITVADGATSDQILAGTTYEYVGPGTRLVVAAAADDAGVQMNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMVTTAAERNRPIITFTNNSGASRTIDVAVFIGG*
Ga0065203_1462975	Ga0065203_14629754	F057206	MNIVIYVLCFATILNIALVSIAITRVAEFKKSVQGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKEQATKALSQPEPMRQVGG*
Ga0065203_1462988	Ga0065203_14629881	F008886	NTGYVMNDMVTTGQVRNRPVITFTNNDASAVDIEVAVFIGG*
Ga0065203_1462988	Ga0065203_14629885	F049611	MPLVKKNINVAAGATSDQILQGTTYEYVDPGTRIVVAAAEATGTYSGNAVMNFTVNNAEFAKDAAVSEKVSGEAFGWNNTGYVMNDMVTTG
Ga0065203_1463006	Ga0065203_14630061	F008886	NTGYVMNDMVTTGQVRNRPVVTFTNNDAASVDIEVAIFIGG*
Ga0065203_1463006	Ga0065203_14630065	F049611	MPLVKKNITLAAGATSDQILQGTTYEYVDPGTRLVVAAAESTGTYSGNVVMDFTVNNAEFAKNAAVSEKVSGEAFGWNNTGYVMNDMVTTG
Ga0065203_1463048	Ga0065203_14630484	F020468	MPLVKKDITLAAGATSDQILAGTTYEYVSGGTRLIVAATAGDGAGGIGADDDTEVVMNFNVNNAEFARDASVSPAISGEAFGWKGNYVMNDMVTTAAERNRPIITFTNNSAAARNVKVAVFIGG*
Ga0065203_1463071	Ga0065203_14630712	F000713	MPLVKKNITLAAGATSDQILAGTPYEYVGNNVAITVAAAESTGTYSGNVVMNFLINNTSFSDNVAVSEKVSGEAFGWRGGYVLNETQTAADSVRNRPVVTFTNNDASSVDIEVAVFIGA*
Ga0065203_1463095	Ga0065203_14630953	F001607	MPVLANNLSLTAGSSSSNLFDNTNYQFINEGTALRIYGAVVGANDGAQGANVNYRFTINNTEFAEDAIVPALVTGEPFTGVDGGPYLLNSVIATGQSRNRPLYVIRNQTAGTLVVKYFIFISQQV*
Ga0065203_1463106	Ga0065203_14631061	F082626	MNEKERILIETVMDMINGTLNNMAEDIWHCPAQWLLENWWHSLNAALQIGDHVDSSLNSPEPTDQAESKKRDEHIQPDEPFEV*
Ga0065203_1463117	Ga0065203_14631173	F030418	MGLLDALGTVLERVVPTAIGFATGGPAGAVSAAAGVERAKQNEKIMERNMAYFQDPGLSGGVTGYSTPAPPQTQSAGFFGNLGQTIGGFGRDVSQFFQDIAPTAQLFGATLPGQRQAPPAATSVIRQAPDETSTSGELLGANLGMGSFLLQTGRQLARSPAGQALIGGGVGLAAGALSGGANGAPRITRKMKSDVRRIYMMSGMNPQVTAQILNNIGTYPRINFDANAVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNNVCKPTTRRAPARRAAPRGVQLIKN*
Ga0065203_1463117	Ga0065203_14631174	F002151	MLYVQYIAIGCSIAAFVLSLIACARIGKFSKATADTDWETLANLTGDIAALKRTAQTLNNRLNGMNKAVVPQDQIIQQMLEHTNVEQIRRGG*
Ga0065203_1463839	Ga0065203_14638394	F038915	MPSIIVKNAAAGTANALDGLQFQDLDGPALISIYATTAVAGGNIDYSVGTERYLVAAVPNIEASADVVDTDRDQVLFREPVAAGRQYLSVNDQICNVLVVIEELS*