3300004340: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4A

Overview

Basic Information

• IMG/M Taxon OID: 3300004340
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110188 | Gp0091629 | Ga0066239
• Sample Name: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4A
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39295924
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mangrove biome → intertidal zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Sao Paulo State, Brazil
• Coordinates
  • Lat. (^o): -23.8553
  • Long. (^o): -46.1394
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F043157	Metagenome / Metatranscriptome	157	Y
F055469	Metagenome / Metatranscriptome	138	Y
F088984	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0066239_1005991	All Organisms → cellular organisms → Eukaryota → Opisthokonta	614
Ga0066239_1006710	Not Available	591
Ga0066239_1006735	Not Available	590
Ga0066239_1009286	Not Available	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066239_1005991	Ga0066239_10059911	F088984	MAFERSPSIRLWWAHVTVTPEASRTAVFRRGTLNGLIGVIPTGGQQHPSSGVGARLLWKKAQKKAKKKHTSEIIKRTIPHRKPLATYEV*
Ga0066239_1006710	Ga0066239_10067102	F001758	ERLGQAGWLNPSKAESKGKVEEAGFTSSSGGVRAPSVTRSVELNGEER*
Ga0066239_1006735	Ga0066239_10067352	F043157	IFDERFRDCICLNIYDRIDGMQMPGESIMIKMAKGLERRIS*
Ga0066239_1009286	Ga0066239_10092861	F055469	MLKRTVVILAAAAFFGGTVPTQTAQARDDMWDLMNPSWWADQIFDDDDDDWWYYRHHAYNPYWGAPQVQRPRVIVIQSPETVAQNPEIRLPE*