3300004330: Marine microbial communities from Galveston Bay (CSEDA13C- fraction 6)

Overview

Basic Information

• IMG/M Taxon OID: 3300004330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111382 | Gp0110220 | Ga0065200
• Sample Name: Marine microbial communities from Galveston Bay (CSEDA13C- fraction 6)
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31420221
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine benthic feature → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Galveston Bay, USA
• Coordinates
  • Lat. (^o): 29.5
  • Long. (^o): -94.76
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025653	Metagenome / Metatranscriptome	200	Y
F034976	Metagenome	173	Y
F043801	Metagenome / Metatranscriptome	155	Y
F048676	Metagenome / Metatranscriptome	148	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0065200_1204430	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	500
Ga0065200_1210572	Not Available	816
Ga0065200_1211244	Not Available	886
Ga0065200_1213744	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1367

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0065200_1204430	Ga0065200_12044302	F034976	MTGSNLVRCQRCGEPVGYITVLGRGLMGMQQPIDNVKVVAVCMDCSQKH*
Ga0065200_1210572	Ga0065200_12105722	F043801	MFLAEKFTGICPCGFSFTTPAGKDDAVAVMKYHAELQHKKDYPNGATTEQAMKYIKKV*
Ga0065200_1211244	Ga0065200_12112441	F025653	MSDPIEYFRHKLKDMSLRELHAYKKRLDENIKQMISTNKPNEQIAPLILYRGILEHEIKTRKTP*
Ga0065200_1213744	Ga0065200_12137443	F048676	MLFRYSRLCGTASDAVDAVKLEILKGFKLLKLKLTEYLKNIIKLTISKI*