3300004090: Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)

Overview

Basic Information

• IMG/M Taxon OID: 3300004090
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114265 | Gp0110092 | Ga0064458
• Sample Name: Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145209110
• Sequencing Scaffolds: 39
• Novel Protein Genes: 45
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	23
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus → Fictibacillus macauensis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Eurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Unclassified → Unclassified → Unclassified → Eurytemora Affinis Associated → Eurytemora Affinis Associated Microbial Communities From Braddock Bay, Ny (Lake Ontario)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Braddock Bay, NY, USA
• Coordinates
  • Lat. (^o): 43.30746
  • Long. (^o): -77.707341
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000044	Metagenome / Metatranscriptome	3572	Y
F000048	Metagenome / Metatranscriptome	3365	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F001109	Metagenome / Metatranscriptome	775	Y
F004498	Metagenome / Metatranscriptome	435	Y
F007421	Metagenome / Metatranscriptome	351	Y
F025753	Metagenome / Metatranscriptome	200	Y
F031755	Metagenome	181	Y
F034188	Metagenome / Metatranscriptome	175	Y
F037597	Metagenome	167	Y
F038254	Metagenome / Metatranscriptome	166	Y
F058717	Metagenome	134	Y
F059702	Metagenome	133	Y
F061890	Metagenome / Metatranscriptome	131	Y
F065796	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064458_1003545	Not Available	925
Ga0064458_1004801	Not Available	1141
Ga0064458_1012523	Not Available	720
Ga0064458_1012864	Not Available	1071
Ga0064458_1018625	Not Available	785
Ga0064458_1020414	Not Available	1208
Ga0064458_1021462	Not Available	1591
Ga0064458_1023252	Not Available	1354
Ga0064458_1029922	Not Available	825
Ga0064458_1033927	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1578
Ga0064458_1037909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Fictibacillus → Fictibacillus macauensis	668
Ga0064458_1053199	Not Available	811
Ga0064458_1069507	Not Available	506
Ga0064458_1076096	Not Available	620
Ga0064458_1132416	Not Available	815
Ga0064458_1132867	All Organisms → cellular organisms → Eukaryota → Opisthokonta	610
Ga0064458_1133793	Not Available	503
Ga0064458_1150198	Not Available	503
Ga0064458_1165132	Not Available	831
Ga0064458_1165437	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	676
Ga0064458_1166016	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	578
Ga0064458_1183926	Not Available	516
Ga0064458_1198663	Not Available	611
Ga0064458_1198740	Not Available	604
Ga0064458_1199208	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	576
Ga0064458_1201248	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	506
Ga0064458_1213277	Not Available	954
Ga0064458_1215361	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	580
Ga0064458_1242369	Not Available	898
Ga0064458_1244400	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	658
Ga0064458_1248067	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	540
Ga0064458_1255788	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	864
Ga0064458_1258471	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	677
Ga0064458_1267542	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1649
Ga0064458_1279178	All Organisms → Viruses → Predicted Viral	1134
Ga0064458_1280811	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	861
Ga0064458_1281812	Not Available	729
Ga0064458_1283403	Not Available	562
Ga0064458_1290181	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	688

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064458_1003545	Ga0064458_10035451	F059702	MKCFDVPLEHEWKVPVSQELLNTRMNNLYVEGFDDYVITEMINMLC
Ga0064458_1004801	Ga0064458_10048011	F037597	MSTEMEFKEFEPRFKSAKTRFKLSDGLNLETFDAILSGTN
Ga0064458_1012419	Ga0064458_10124192	F000048	LGTSEKACIEGLSKPSNLDEVKALNEKVNGFAKSCDNYLKVLMAADAAAKKMTTHGEADKEVAALKERFDKVKAVSDSWVAKVDTLLKEWTLLDNTVTELNQWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVDGL*
Ga0064458_1012523	Ga0064458_10125231	F037597	MASHLKIMLPEMELKEFEPWFKSAKTRFKLSAGLNLETFDTNLSGPNHI*
Ga0064458_1012864	Ga0064458_10128641	F059702	MLVKKQMNYFDVPWEHEWKVPVLQELLNTRMNNLYVEGFDDYVITEMINMLY
Ga0064458_1018625	Ga0064458_10186251	F059702	MLVKKQMKYFDVPLEHEWKVPVLQELLNTRMNNLNVEGFDDYVITEMINML
Ga0064458_1020414	Ga0064458_10204141	F059702	MLVKKQMKYFDVPLEHAWKVGFLSTRMNNFYVEGFDDYVITEMINMLCN
Ga0064458_1021462	Ga0064458_10214624	F037597	MEYKEFESQFKSAKTQFKLSIGLDLKTFDTILSGTNNFKLRLKFKP
Ga0064458_1023252	Ga0064458_10232521	F037597	PRAQIAQKAQSEPEMEFEPRFKSAKTRFKLRARLNLETFNTILSGTNHI*
Ga0064458_1029922	Ga0064458_10299222	F037597	MEFKEFEPRFKSAKTRFKLSAGLNLETFDTILSGTNHIKAAA*
Ga0064458_1033927	Ga0064458_10339272	F004498	MDNFKLNSIFQGEETCSERTQTIVQDAPKEECTLEPQRTCAHVTKLVPKLEPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYIPSAESGLA*
Ga0064458_1037909	Ga0064458_10379091	F059702	VNIFSVCVLYCIDVPLEHEWKVPVLQELLSTRMNNLYVEGFDDYVITEMINMLCSE*
Ga0064458_1053199	Ga0064458_10531992	F058717	MFYLANFHGRNWRIPVLIEPSSSLNPTKVGLIFIGPNSLSRAEDFAAVNHVTQAVVKVGSKIGS*
Ga0064458_1069507	Ga0064458_10695071	F037597	ASHLKIMLPEMELKEFEPWFKSAKTRLKLSAGLNLETFDTILSGTNHI*
Ga0064458_1075964	Ga0064458_10759641	F058717	MRIRPNIEPYSPLKPTKVGFIFIGPNSLSRAEDLAAVNHVTQAVVRVGPNC*
Ga0064458_1076096	Ga0064458_10760962	F037597	MLKLNEPFRDSEMEFKEFEPRFKFSAGLNLETFDTILSGTNHI*
Ga0064458_1132416	Ga0064458_11324161	F037597	MNSEIEFKEFEPRFKSAKTRFKLSAGLNLETFATVLSGTNHI*
Ga0064458_1132867	Ga0064458_11328671	F031755	LMSKAFQKAKFYQNLTSGSGSKQRFSLLQEKTVIQAVCLRNQAVSIKARF*
Ga0064458_1133793	Ga0064458_11337931	F037597	HNTDNLQPFISEMEFKEFELRFKSAKTRFKLSAGLSLETFDTLLSGTNHI*
Ga0064458_1150198	Ga0064458_11501982	F037597	MEFKEFEPPFKSTKTRFKLSAGLNLETFDAILSGKPYLTRGLNLNRRSN
Ga0064458_1165132	Ga0064458_11651321	F037597	MYSEMEFKEFEPRFKFAKNRFKLSAGLNLETFDTILSGTNHI*
Ga0064458_1165437	Ga0064458_11654371	F058717	SWFLRETRLSIEPYSPLKPTKVGLIFIGPNSFSRAEDLAAVNHLTQAVVRVGSKIGS*
Ga0064458_1166016	Ga0064458_11660161	F037597	MALQLLTKISEMEFKEFEPRFKYSKTRFKLSAGLNLETFDTLLSGTNHI*
Ga0064458_1183926	Ga0064458_11839261	F038254	IRDRPSSLPESLALFEKIEVFDKKCLAHLKILESAETASKKMTTHQEADDQIAELMNRYKCVKKVSDTWLNKVNTLVQEWKLLDSTVNELNEWVAKDKSNEGEHQFSLEKMESTLSELKNIFKEKEKLVDNL*
Ga0064458_1198663	Ga0064458_11986631	F037597	MNPEMEFKEFEPRFKSAKPRFKFSAGLNLETFDTIFSGTNHI*
Ga0064458_1198740	Ga0064458_11987402	F037597	MEFEEFEPQFKSAKIRQNPFKLSAGLNLETFDTILSGTNHI
Ga0064458_1199208	Ga0064458_11992081	F007421	MS*SIAFNDQFSSVIPCSINHIQSNNQFLFQGFTLILLVAATTADFVGHDHGNQLARAGRQEGAIQGGIDFSGCVQDAETGLCCVEKEETVQTLKKDPILECTHKNTEQCHYTYVTKFVPSQEEVCEENFEKTCQITFKQQAFNETVEKCYKPSIKECNGQGEEICQTVYESACTTKYVE
Ga0064458_1201248	Ga0064458_12012481	F034188	VDAPKEVCTRGRTNPRKVKKPVVKKWCYIPSVESGFVLPL*
Ga0064458_1213277	Ga0064458_12132772	F059702	MLVKKQMKYFDVPLEHEWKVPVLQELLSTRMNNLYVEGFDDYVITEMINMLCSE*
Ga0064458_1215361	Ga0064458_12153611	F061890	SIAAEFEKAEEEIKRVKKRFNLQSALDDLKKRQDIYNGSNNTINKLFESINANFKCMCITLPDDKKKIVEKEIKAVSEKLEVNGRFKDKVDKLGEFCTELKNFDSSLKAIDAWKDKATSELDDIRNSSGNMLPEDRVARTMDLQEDIAAKCEILVKNAETEKELLPQGISFSIKNLKFSHKIKLNFNDPKPPS
Ga0064458_1242369	Ga0064458_12423691	F059702	MKKMKYFDVPLEHEWKVPVLQELLNTRMNNLYVEGFDDYVITEMINMLCSE*
Ga0064458_1244400	Ga0064458_12444002	F037597	MEFKEFEPRFKSAKTRFKFSAGSNLETFDTILSGTNHKHN
Ga0064458_1248067	Ga0064458_12480671	F025753	ITPVKQHSSADMSGPFGFVEKGTFFIDDTVSGFPERIDMVYQGFVWAFDVYYPDQDTQRHGGIHTILKDKVKKETVNLKNDYIIRITGRASPYNINRLTFHTANGKEFGPWGDRHSDESADFDVSAPAGYALSFFSGTIDFGVPLRSVGFHWKKI*
Ga0064458_1255788	Ga0064458_12557881	F037597	MKFKEFEPRFKSAKTRFKFSAGLNLETFDTILSETNHIYATA*
Ga0064458_1256819	Ga0064458_12568191	F000021	RECDKVIDKNGPTKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKTKIMDNIHKYFYCICFAAYLREAAILSKDAASEEDKKAFSLTGGKVSTPADQLKMSKTFVQYMDEHSKLRTIVDEGKGKLQWERDIPAEALANLESLASTDFKGNLGKIIHDIYQTAHGLFKDLPQGDHKKRAKYRFASKTLMRVLPNDLKAEVEGLIANQTMTLDLYEILGQCTWGQAKA*
Ga0064458_1258471	Ga0064458_12584712	F058717	TKLNIEPYSPLKPTKVGFIFIGPNSVSRAYDLVAVNHVTQAVVGVRSKIGT*
Ga0064458_1267542	Ga0064458_12675421	F001109	VLVGSGFADFVGHSHGQEARSGRQETAIQGGIDFSGCVQDSETGLCCVEKEETVTSLEKEPILECTHKNVEQCHYSYVTQFTPSQEEVCEENFEKTCQITFKQQAFNETVKKCYKPVTKVCNGQGPEECRTVYESACTTKYVEKQPGKFVGDTSCEKLPVEICGAGCTFEEGDEECHDKVITSLVDVPEEVCDLNPQKVCKFITKLVPKLKPEHQCTLVPKETCTLKFTQPKQIPKPLLTKWCLDPTPAAPGDSYDESQADAPVISTAEEPIYEPEPVIKPDVGYLSPGSPHQGRNQDFQGDLPFNSPFIPQQQQFRQNSFSTQF*
Ga0064458_1269049	Ga0064458_12690491	F000048	FEKACINHLKVLEAADSAAKKMTTHKEADIEVSALKERYMKVKAIADDWVKKVDTLVKEWQLLDNTVSELNAWVAKDKTAEGENQFSLEKMESTLGELKNIFKEKEKLVEGL*
Ga0064458_1272814	Ga0064458_12728141	F000048	VEADAEVAALKARYTKVKGHSDNFVSKVDTLLKEWTLLDNTVTELNTWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKESLVENLNM*
Ga0064458_1279178	Ga0064458_12791781	F065796	LRAGPQDYNMRMKTASMFRTNIEDIFNTCSGANDILQVMLPDEKKPEMNDQTSELKTRMDILAKIDERLAFIDDFNKRLNIFDVGVKEMENWLGEGRKRLDLIKTPPEEMSPEDRVTKSMELQEDLNKKSEFTKKLEVEKDDIFPKSGEKVSSDAKKFIERLKKVRTTLNALDDEVSAECAKFSEDVKFWAEFQTGLKVFEPWMKNAELRKISGLKKPSSLVEACEILGDSKNLQDEAEAKLRVLEEAASAAQKMTSHHEADIKVEGFKKRWTVVHECFQEWVARMTTLVECWNKLDGNVGELSSWVATKDSSAPEGSSEISIEQLETQLNTLKTMFAEKQKLVSDLDAYGPAGAVVPAPVAVAPVEAPAAELAAEV
Ga0064458_1280811	Ga0064458_12808112	F037597	MAEFKEFERRFKSAKTRFKLSAGLNLETFDTILSGTNHI*
Ga0064458_1281812	Ga0064458_12818121	F037597	MDIKAIPEMEFEEFEQRFESAKTWFKLSPGLNLETFDTILSGTNHI*
Ga0064458_1283403	Ga0064458_12834031	F037597	MDFKAIPEMEFEEFERRFESAKTRFKLSASLNLETCDTI*
Ga0064458_1289502	Ga0064458_12895021	F000044	VITADIGLTGLSRHRRQAGGIPGGVDFSGCVQDQDTGLCCVDKIEEVTTLQKDPILECTHKNTEQCHYTYVTQFTPAQEEVCEENFEKSCQITFKQQAFNETVKKCYKPVEKVCNGQGPEECRTVYESSCTTKYVEKQPGKFVGDTSCEKLPVEICGAGCTYEEGPEECHDKVIASLVDVPEEVCDLNPQKTCKLTTKLVPKLKPEHQCTIVPQEVCNLKFSQPKQVPKPLLTRWCLDPTPAAPGESYDESNALGAPIGRR
Ga0064458_1290181	Ga0064458_12901811	F000049	LYLVTIITVVSYDNLLASINFSSNSESFNVTLFQALCKDLERAEVKKWLAHILEILMAERAKDQRNDEMGKLDNIIKKHEELIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLNQLETKRGVVKELIEKGKIILMNPDKPRFLEGHVQRIEVGWDDTKTKAQDRLKLLQETKNAWVGYAENNETIASEFEKAEE