3300003970: Enrichment cultures from Lake Fryxell 39872

Overview

Basic Information

• IMG/M Taxon OID: 3300003970
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113966 | Gp0109835 | Ga0063602
• Sample Name: Enrichment cultures from Lake Fryxell 39872
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83774997
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Harmful Algal Blooms In Lake Erie
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → glacial lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013535	Metagenome / Metatranscriptome	270	Y
F022487	Metagenome / Metatranscriptome	214	Y
F038305	Metagenome	166	Y
F050234	Metagenome / Metatranscriptome	145	Y
F072103	Metagenome / Metatranscriptome	121	Y
F104508	Metagenome	100	Y
F105523	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0063602_102391	All Organisms → cellular organisms → Bacteria → Proteobacteria	2983
Ga0063602_103086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2611
Ga0063602_103472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2465
Ga0063602_103856	All Organisms → cellular organisms → Bacteria	2334
Ga0063602_105095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2005
Ga0063602_123992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor	687

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063602_102391	Ga0063602_1023914	F022487	MPIRRSPNGPHYPRPQPGRDHPEQVVAINRNDRSQSIGKGGRNHPVRAVGPS
Ga0063602_103086	Ga0063602_1030862	F104508	MDLPVMLREALELQILEQEAERAATVIGTGVAQHGAVAVAGVLLEATAVALRRMVSITDEAFDLAELLTQLALDGAVPEHRLELLTDILTASAATAGGVRPSVEALQNRLGDQDLLFGAWLGILTGLRVVSLAIEVTEPELMEDVMLSFELFDEAG*
Ga0063602_103472	Ga0063602_1034722	F038305	MAGWGDDPQLAELRTLVYEDGWTPVAVTEASDADTVVVEKEGEQRTFRSDHIAFHRFVEGVKEDFGL*
Ga0063602_103856	Ga0063602_1038563	F013535	MLFELMLLYAYRTLALAVAIMMVWVLFRERNWQQQFFAMLVFVPFALRAAGVK*
Ga0063602_105095	Ga0063602_1050951	F050234	MTPPLPLLLLLLEFPVLMALLDCWQRPEEHFAGGAEDRRSWLKWLGVGVLTVPVLLGFGIVLGYYHSVIRRNSPASRS*
Ga0063602_112102	Ga0063602_1121021	F105523	MARPQIDDVTAVVKDAAYVSVGLGVIAFQRLQVRRNELSKALAGQTDDAKGTLDTVAAMVGDQLKLVEERVSAALERTPLR*
Ga0063602_123992	Ga0063602_1239921	F072103	MTTILDTVVSYEDQLVDFVKKAQSPVVEYVAKGVELVEDRLPEVTYPTSLPTPIEVVETQVAFAKKLIDANTALVTAVLETVAPVAGFAKPKKVVKAAKAA*