3300003889: Freshwater pond sediment microbial communities from Middleton WI, enriched with Humin and Glucose under anaerobic conditions - HM Sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300003889
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113782 | Gp0109207 | Ga0062441
• Sample Name: Freshwater pond sediment microbial communities from Middleton WI, enriched with Humin and Glucose under anaerobic conditions - HM Sample 1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Wisconsin
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 208208476
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Middleton, WI
• Coordinates
  • Lat. (^o): 43.0603
  • Long. (^o): -89.5717
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001819	Metagenome / Metatranscriptome	630	Y
F015489	Metagenome / Metatranscriptome	254	Y
F017253	Metagenome	242	Y
F064239	Metagenome / Metatranscriptome	129	Y
F067891	Metagenome / Metatranscriptome	125	Y
F075999	Metagenome	118	Y
F076659	Metagenome	118	Y
F079165	Metagenome / Metatranscriptome	116	Y
F088758	Metagenome	109	Y
F091904	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0062441_1008377	All Organisms → cellular organisms → Bacteria	3572
Ga0062441_1024357	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31	1460
Ga0062441_1033183	Not Available	4366
Ga0062441_1038137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1161
Ga0062441_1043155	All Organisms → cellular organisms → Bacteria	1240
Ga0062441_1053517	Not Available	1382
Ga0062441_1070526	Not Available	525
Ga0062441_1104166	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	529
Ga0062441_1106124	All Organisms → cellular organisms → Bacteria	1546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0062441_1008377	Ga0062441_10083775	F015489	MQLREDQLKGSRPVCPRGCPGTVDRHGRYQRYTDPEGSQKEDIQRYLCRPCGLTFSVLPEHRLPYRAIRAQRLQEDFDQRAGIQTQGLDPPPRLLEAGCLQRAWSALTARVTTLQEAFGQLVDDTFSEVASFWASLRRSMDSVSKMLCFLSKHHHISLLGNYRCLRPPG*
Ga0062441_1024357	Ga0062441_10243571	F017253	LVIVVIYKIACNVGSYTQGRTAGDFLSNRKAARAEKCPPKTFAAELAG*
Ga0062441_1033183	Ga0062441_10331835	F088758	MRWLAIDIGEWEEIRQCPECGAAWLATWPEESEAPPVFCRPKPLGTRXRKLRDLDHAATLRPYCLARLEEQLGELKERKADCRKVNCSRHRLAGSTYCLEHLIAERFGKDLAKLG*
Ga0062441_1038137	Ga0062441_10381372	F064239	VCKGTPPNERLGLRVPYETIKETVADYFDIAHAVDPDLAEYRNDLLEIFPRRSERSRPRGALSAARFIQQHQRMLMDKVSAWIGKSDRRVVGRFLRQLQALCTYEHLMVPEAQRNEKLVDLTIVATWHVLDGIHRLSDRHPSRR*
Ga0062441_1043155	Ga0062441_10431552	F076659	VLWAPSSDPVHPPNALTYYLQHETMSAPTIDRFVEAVKRQCRPEERIFGEYSLGPFAAALGPCVLAANLADTNPHRFKVHESTPEGWVRALEADHLSIAIVTSGAGMLKERAIREYFYGTFPRVVETWDDPYMGHVELRRRAE*
Ga0062441_1053517	Ga0062441_10535171	F091904	MPEANSSIAKDMEQPTRSTARRRDDTARFVERFEALTGHRVNSTSAEGLPREFLARVVQTPDVLIEQYGYELEPRTHNALCRYEPGRHADHWTFGRLLEIRGFGVFSLLDLLEVLAKHGISYKA*
Ga0062441_1070526	Ga0062441_10705262	F001819	TEVFQTLTNDCHLKHPAVHQSTALVVLTMVRLLAYTLSLVFYHRQIRSHVHGRCPGFHEFAKRMTYWFVALSADTS
Ga0062441_1104166	Ga0062441_11041661	F079165	MIKSDAQRDRTLAQIAGFRQALAKVELESTGRRSAAIRGSYEGMIR
Ga0062441_1106124	Ga0062441_11061242	F075999	MLNTRTSAVAMALLSLLLVAPAARAESSAKPKYYFKLTNIQAQDKSIIPLASELLKEEVDSRPEFTTDIGTAESEDAQIAEIRRQGMQGYQVSMRIENFKKEIKPPAPGKKDQQMAISVRLTIFGHTIPGQKMMFTGDGDASLMGEFSERLKDKEEERFTRTALASAVKQAVSTAVAKMTNAVLPSGPPKAKKGKXXXXXXXXXXXXXXXXAPREVEHDQR*
Ga0062441_1107415	Ga0062441_11074151	F067891	VNDERFSSYMALDGPHLDGLIGSAGVLRFDWPEKKTYIQHFDGISAAHNVSVAHNGQLALLGNFSQQIVVLDISNPN