Metagenome / Metatranscriptome Family F079165

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079165
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	44 residues
Representative Sequence	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYE
Number of Associated Samples	107
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.41 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	94.83 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.276 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.207 % of family members)
Environment Ontology (ENVO)	Unclassified (22.414 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.690 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00589	Phage_integrase	4.31
PF08299	Bac_DnaA_C	4.31
PF08281	Sigma70_r4_2	2.59
PF02517	Rce1-like	1.72
PF05685	Uma2	1.72
PF07992	Pyr_redox_2	0.86
PF01381	HTH_3	0.86
PF07969	Amidohydro_3	0.86
PF13193	AMP-binding_C	0.86
PF07676	PD40	0.86
PF13744	HTH_37	0.86
PF13683	rve_3	0.86
PF01850	PIN	0.86
PF02678	Pirin	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	4.31
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.72
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.72
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.28 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	83.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.72 %
Unclassified	root	N/A	1.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	79.31 %
Unclassified	root	N/A	1.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	77.59 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.72 %
Unclassified	root	N/A	1.72 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	77.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.72 %
Unclassified	root	N/A	1.72 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	77.59 %
Unclassified	root	N/A	1.72 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.86 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	77.59 %
Unclassified	root	N/A	1.72 %
Phenylobacterium zucineum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	0.86 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104548220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	819	Open in IMG/M
3300003889\|Ga0062441_1104166	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	529	Open in IMG/M
3300004152\|Ga0062386_101727274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	522	Open in IMG/M
3300005166\|Ga0066674_10371971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	668	Open in IMG/M
3300005538\|Ga0070731_10034233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3428	Open in IMG/M
3300005610\|Ga0070763_10617229	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	630	Open in IMG/M
3300005610\|Ga0070763_10741275	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	578	Open in IMG/M
3300005617\|Ga0068859_102129559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	619	Open in IMG/M
3300005764\|Ga0066903_107983383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	543	Open in IMG/M
3300006172\|Ga0075018_10202613	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300009038\|Ga0099829_11259791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	612	Open in IMG/M
3300009088\|Ga0099830_11869832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	502	Open in IMG/M
3300009143\|Ga0099792_11134151	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	528	Open in IMG/M
3300009177\|Ga0105248_11123618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	888	Open in IMG/M
3300009500\|Ga0116229_10321779	All Organisms → cellular organisms → Bacteria → Acidobacteria	1302	Open in IMG/M
3300009510\|Ga0116230_10121385	All Organisms → cellular organisms → Bacteria → Acidobacteria	2206	Open in IMG/M
3300009545\|Ga0105237_12580925	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	519	Open in IMG/M
3300009551\|Ga0105238_12109274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	598	Open in IMG/M
3300009638\|Ga0116113_1147604	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	588	Open in IMG/M
3300009672\|Ga0116215_1484645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	535	Open in IMG/M
3300010049\|Ga0123356_12787935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	612	Open in IMG/M
3300010361\|Ga0126378_11782531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	700	Open in IMG/M
3300010366\|Ga0126379_12266683	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	644	Open in IMG/M
3300010366\|Ga0126379_12807182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	583	Open in IMG/M
3300010379\|Ga0136449_102025447	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	849	Open in IMG/M
3300010391\|Ga0136847_11216479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	661	Open in IMG/M
3300011064\|Ga0138525_1007553	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	517	Open in IMG/M
3300012096\|Ga0137389_11705368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	526	Open in IMG/M
3300012209\|Ga0137379_10678002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	937	Open in IMG/M
3300012209\|Ga0137379_10865029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	809	Open in IMG/M
3300012285\|Ga0137370_10134343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1420	Open in IMG/M
3300012361\|Ga0137360_10270295	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300012363\|Ga0137390_10654712	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012469\|Ga0150984_119672281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	529	Open in IMG/M
3300012944\|Ga0137410_10021103	All Organisms → cellular organisms → Bacteria → Proteobacteria	4485	Open in IMG/M
3300012971\|Ga0126369_11367667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	798	Open in IMG/M
3300014167\|Ga0181528_10348170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	804	Open in IMG/M
3300014200\|Ga0181526_11000985	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	525	Open in IMG/M
3300014491\|Ga0182014_10577044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	545	Open in IMG/M
3300014492\|Ga0182013_10594779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	564	Open in IMG/M
3300014498\|Ga0182019_10887596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	642	Open in IMG/M
3300014498\|Ga0182019_11331957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	531	Open in IMG/M
3300014655\|Ga0181516_10312017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	800	Open in IMG/M
3300014838\|Ga0182030_10469380	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1273	Open in IMG/M
3300014838\|Ga0182030_11188927	Not Available	652	Open in IMG/M
3300014969\|Ga0157376_11580647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	690	Open in IMG/M
3300015245\|Ga0137409_11075981	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	643	Open in IMG/M
3300016270\|Ga0182036_11318623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	603	Open in IMG/M
3300017940\|Ga0187853_10397072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	611	Open in IMG/M
3300017941\|Ga0187850_10383993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	614	Open in IMG/M
3300017948\|Ga0187847_10120552	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300017948\|Ga0187847_10336900	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	826	Open in IMG/M
3300018035\|Ga0187875_10773677	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	502	Open in IMG/M
3300018083\|Ga0184628_10406835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	711	Open in IMG/M
3300018085\|Ga0187772_11169074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	566	Open in IMG/M
3300018431\|Ga0066655_10568756	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300020583\|Ga0210401_10279589	All Organisms → cellular organisms → Bacteria → Acidobacteria	1529	Open in IMG/M
3300020610\|Ga0154015_1587628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	653	Open in IMG/M
3300021171\|Ga0210405_10540394	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	911	Open in IMG/M
3300021178\|Ga0210408_10629363	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300021401\|Ga0210393_10373518	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300021403\|Ga0210397_10890786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	689	Open in IMG/M
3300021407\|Ga0210383_10882003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	763	Open in IMG/M
3300021432\|Ga0210384_10161933	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300021479\|Ga0210410_11403279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	591	Open in IMG/M
3300021559\|Ga0210409_11205805	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	632	Open in IMG/M
3300022511\|Ga0242651_1035286	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	577	Open in IMG/M
3300022557\|Ga0212123_10448491	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	851	Open in IMG/M
3300025854\|Ga0209176_10025937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum	1230	Open in IMG/M
3300026223\|Ga0209840_1061100	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300026551\|Ga0209648_10541776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	654	Open in IMG/M
3300027619\|Ga0209330_1108718	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	630	Open in IMG/M
3300027807\|Ga0209208_10086084	All Organisms → cellular organisms → Bacteria	2249	Open in IMG/M
3300027815\|Ga0209726_10395598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	645	Open in IMG/M
3300027817\|Ga0209112_10078035	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300028381\|Ga0268264_12258241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	551	Open in IMG/M
3300028536\|Ga0137415_10321253	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300028560\|Ga0302144_10116108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	862	Open in IMG/M
3300028860\|Ga0302199_1265093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	515	Open in IMG/M
3300028863\|Ga0302218_10060148	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300028906\|Ga0308309_10963806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	740	Open in IMG/M
3300028906\|Ga0308309_11020283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	716	Open in IMG/M
3300029636\|Ga0222749_10400503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	727	Open in IMG/M
3300029913\|Ga0311362_11249342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	547	Open in IMG/M
3300029922\|Ga0311363_11605366	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	513	Open in IMG/M
3300029945\|Ga0311330_10668981	Not Available	805	Open in IMG/M
3300029952\|Ga0311346_11183701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	598	Open in IMG/M
3300029985\|Ga0302280_1209832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	677	Open in IMG/M
3300029987\|Ga0311334_11676614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	541	Open in IMG/M
3300029999\|Ga0311339_11344832	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	645	Open in IMG/M
3300030000\|Ga0311337_11560669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	579	Open in IMG/M
3300030043\|Ga0302306_10249450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	681	Open in IMG/M
3300030617\|Ga0311356_12059510	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	503	Open in IMG/M
3300030688\|Ga0311345_10661084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	851	Open in IMG/M
3300031128\|Ga0170823_17068161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	511	Open in IMG/M
3300031236\|Ga0302324_102028062	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300031446\|Ga0170820_12506339	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	663	Open in IMG/M
3300031521\|Ga0311364_10924216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	873	Open in IMG/M
3300031521\|Ga0311364_11334706	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	711	Open in IMG/M
3300031524\|Ga0302320_12033872	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	537	Open in IMG/M
3300031708\|Ga0310686_100791757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	844	Open in IMG/M
3300031715\|Ga0307476_11435595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	502	Open in IMG/M
3300031823\|Ga0307478_11823132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	500	Open in IMG/M
3300031954\|Ga0306926_10934865	All Organisms → cellular organisms → Bacteria → Acidobacteria	1036	Open in IMG/M
3300031962\|Ga0307479_12138154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	507	Open in IMG/M
3300032008\|Ga0318562_10110437	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300032805\|Ga0335078_11240160	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	857	Open in IMG/M
3300032805\|Ga0335078_11949689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	631	Open in IMG/M
3300032954\|Ga0335083_10764175	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	778	Open in IMG/M
3300033134\|Ga0335073_10218482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2351	Open in IMG/M
3300033158\|Ga0335077_11851030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	565	Open in IMG/M
3300033485\|Ga0316626_11404921	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	627	Open in IMG/M
3300033888\|Ga0334792_167934	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	545	Open in IMG/M
3300034199\|Ga0370514_093257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	767	Open in IMG/M
3300034268\|Ga0372943_0893066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	591	Open in IMG/M
3300034281\|Ga0370481_0347371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.52%
Host-Associated	Host-Associated	9.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.72%
Aquatic	Environmental → Aquatic	13.79%
Plants	Host-Associated → Plants	8.62%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.34%
Peat	Environmental → Terrestrial → Peat	16.38%
Freshwater	Environmental → Aquatic → Freshwater	11.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.31%
Peat Moss	Host-Associated → Plants → Peat Moss	2.59%
Sediment	Environmental → Aquatic → Sediment	1.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.62%
Loam	Environmental → Terrestrial → Soil → Loam	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Lake	Environmental → Aquatic → Freshwater → Lake	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.38%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.34%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.17%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	5.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.72%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Anaerobic Enrichment Culture	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture	0.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003889	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humin and Glucose under anaerobic conditions - HM Sample 1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011064	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028860	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029985	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_1	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034281	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1045482201	3300000364	Soil	MIKSDAQRERTIAQIEGFRRALAEVAEEKRGRRSAAIRGSY
Ga0062441_11041661	3300003889	Anaerobic Enrichment Culture	MIKSDAQRDRTLAQIAGFRQALAKVELESTGRRSAAIRGSYEGMIR
Ga0062386_1017272741	3300004152	Bog Forest Soil	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAILGSYEGMIR
Ga0066674_103719711	3300005166	Soil	MIKSDAQRDGTLAQIEGFRQALAKVEQEKPGKRSAAIRGSYESMIRQLEDE
Ga0070731_100342337	3300005538	Surface Soil	MIKSDAQRERTTAQIEGFRQALAKVDREMTGKRAAAVRGSYEGMIRQLE
Ga0070763_106172292	3300005610	Soil	MIKSDAQRERTAAQVEGFRQALTKVDREMAGKRAMAVR
Ga0070763_107412752	3300005610	Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVR
Ga0068859_1021295592	3300005617	Switchgrass Rhizosphere	MIKSDAQRERTAAQIEGFRVALNKVDREMTGKRAETVRGSYEGMIRQ
Ga0066903_1079833831	3300005764	Tropical Forest Soil	MIKSDAERERTVAQIEGFRRALAKVAEEKPAKRSAAVRGSYEGMIRQLEEE
Ga0075018_102026131	3300006172	Watersheds	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRATAVRGSYEGMM
Ga0099829_112597912	3300009038	Vadose Zone Soil	MIKSDAQRERTVAQIEGFRQALAKVEEGTSRKRSKAVR
Ga0099830_118698322	3300009088	Vadose Zone Soil	MNMIKSDAQRARTLAQIEGLRQALGKVEKERPGKRSA
Ga0099792_111341512	3300009143	Vadose Zone Soil	MIKSDAQRARTVAQIEGFRQALGKVELERPGKRSDAIRGSYEG
Ga0105248_111236183	3300009177	Switchgrass Rhizosphere	MIKSDAQRERTVAQIEGFQQALAKVGEGKPDKRSA
Ga0116229_103217792	3300009500	Host-Associated	MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEK*
Ga0116230_101213853	3300009510	Host-Associated	MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEKLT*
Ga0105237_125809252	3300009545	Corn Rhizosphere	MIKSDAQRERTEAQIKGFQQALAKVDREMTGKRAT
Ga0105238_121092741	3300009551	Corn Rhizosphere	MIKSDAQRERTAAQIEGFRVALNKVDREMTGKRAETVRGSYEGMIRQL
Ga0116113_11476042	3300009638	Peatland	MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRADAVRGSYESMIRQLEDELH
Ga0116215_14846451	3300009672	Peatlands Soil	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGSYE
Ga0123356_127879352	3300010049	Termite Gut	MIKNDAQRVRTVAQIEGFRRALAKVDEEKPGKRSRAVRGSYEGMLRQ
Ga0126378_117825311	3300010361	Tropical Forest Soil	MIKSDAQRERTVTQIEGFRRALAKVAEDKPGKRSDAIRGSYEGMIRQLED
Ga0126379_122666833	3300010366	Tropical Forest Soil	MIKSDAQRDRTLAQIEGFRQALAKAEQERAGRRFAALRGS
Ga0126379_128071821	3300010366	Tropical Forest Soil	MIKSDEQRERTVAQIEGFRRALAKAADEKAGKRSAAIRGSYEGMIRQL
Ga0136449_1020254471	3300010379	Peatlands Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAV
Ga0136847_112164791	3300010391	Freshwater Sediment	MIKSDAQRERTLAQIEGFRKALAKVEQEAHGKRSKAI
Ga0138525_10075531	3300011064	Peatlands Soil	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSA
Ga0137389_117053682	3300012096	Vadose Zone Soil	MIKSEAQRERTVVRIEGFKQALAKAPRDKHGKRSVAIRGSYESMIRQL
Ga0137379_106780022	3300012209	Vadose Zone Soil	MIKSDAQRDRTLAQIEGFRRALAMAEQAKPGTRSAAIRGSYEGMIGQLEEEL
Ga0137379_108650293	3300012209	Vadose Zone Soil	MIKSDAQRDRTVAQIEDFRRALAKAEVEEPGKRSGAIRGSY
Ga0137370_101343434	3300012285	Vadose Zone Soil	MIKSDAQRDRTLAQIEGFRQALAKVEQEKPGKRSAAIRGS
Ga0137360_102702954	3300012361	Vadose Zone Soil	MIKSDAQRERIAAQIEGFRQALAKTEREMTGKRAAAVRGSYEGMIRQLEDE
Ga0137390_106547121	3300012363	Vadose Zone Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYEGMIRQLEDELR
Ga0150984_1196722811	3300012469	Avena Fatua Rhizosphere	MIKSDAQRDRTVAQIEGFRRALGKAEQEKPGKRSAVIRGSY
Ga0137410_100211039	3300012944	Vadose Zone Soil	MIKSDAQRERTAAQIAGFRQALAQVDQDMTGKRASAARGSYEGMIRQLE
Ga0126369_113676671	3300012971	Tropical Forest Soil	MIKSDAQRDRTLAQIEGFRRALVKVTDEKPGKRSAAIRGSYEGMIRQLEEELR
Ga0181528_103481703	3300014167	Bog	VIKSDAQRDRTLAQIEGFRRALAKQQEKPGKRSVAIRGSYE
Ga0181526_110009852	3300014200	Bog	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYE
Ga0182014_105770441	3300014491	Bog	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAVRGSYEGMI
Ga0182013_105947792	3300014492	Bog	MIKSDAQRDRTVAQIEGFRRALAKAEVEEPGKRSA
Ga0182019_108875961	3300014498	Fen	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGSYEGMIRQLED
Ga0182019_113319571	3300014498	Fen	MIKSDAQRDRTIAQIEGFRRALAKAEVDEPGKRSVAIRGSYEGMIRQLEDE
Ga0181516_103120171	3300014655	Bog	MIKSDAQRDRTLAQIEGFRRALAKADEDTPGKRSAAIRGSYESMIRQLEDEL
Ga0182030_104693804	3300014838	Bog	MIKSEAQRERTMTQMAGFRQALAKVARDKPGRRSAAIRASYEGMIRQ
Ga0182030_111889271	3300014838	Bog	MDTIKSDAQRERTAAQLAGFRRALTRVQPDAARKRSAAVRASYE
Ga0157376_115806471	3300014969	Miscanthus Rhizosphere	MIKSEAQRDRTLTQIEGFRQALSKVDREKPGKRSMAIRGSYEGMIRQLEDDL
Ga0137409_110759812	3300015245	Vadose Zone Soil	MIKSDAQRERTAAQIEGFRQALAKVDQEMAGKRAGAVRDSYEG
Ga0182036_113186231	3300016270	Soil	MIKSDAQRERTAAQIEGFRRALTKVAQEKAGRRSAAIRGSYEGMI
Ga0187853_103970722	3300017940	Peatland	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAA
Ga0187850_103839931	3300017941	Peatland	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRRAAVRGS
Ga0187847_101205523	3300017948	Peatland	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVHGSYEGMIRQLENELLE
Ga0187847_103369002	3300017948	Peatland	VIKSDAQRDRTLAQIEGFRRALAKQQEKPGKRSVAIRG
Ga0187875_107736772	3300018035	Peatland	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGS
Ga0184628_104068352	3300018083	Groundwater Sediment	MIKSDAQRERTVAQIEGFHQALAKVGDGKADKRSAAVRGSYQ
Ga0187772_111690741	3300018085	Tropical Peatland	MIKTEAQRNRTLVQIEGFRRALGQAAEELSGKRAAAV
Ga0066655_105687561	3300018431	Grasslands Soil	MIKSDAQRERTVVQIEGFQRALAELGERKLDKRSAAIR
Ga0210401_102795893	3300020583	Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMMRQL
Ga0154015_15876281	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAAAVRGSYEGMIRQLEEE
Ga0210405_105403941	3300021171	Soil	MIKSDAQRERTVAQIEGFRQALTKVDREMTGKRATAV
Ga0210408_106293633	3300021178	Soil	MIKSDAQRDRALAQIEGFRQALDTAKAELSGTRARAVVGSHEGMILQLEAEVRE
Ga0210393_103735181	3300021401	Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRSS
Ga0210397_108907861	3300021403	Soil	MIKSDAQRERTASQIEGFRQALVKVEREMTGKRAAAVRGSYE
Ga0210383_108820032	3300021407	Soil	MIKSDAQRERTTAQIEGFRQALTKVDREMTGKRATAVRSSYEGMMRQL
Ga0210384_101619335	3300021432	Soil	MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRAG
Ga0210410_114032792	3300021479	Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMA
Ga0210409_112058052	3300021559	Soil	MIKSDAQRERTVAQIEGFRQALTKVDREMTGKRATAVRGSY
Ga0242651_10352861	3300022511	Soil	MIKSDAQRERAAAQIEGFRVALNKVDREMTGKRADAVRGSYAGMIRQLEDELR
Ga0212123_104484914	3300022557	Iron-Sulfur Acid Spring	MIKSDAQRERTVVQIEGFRQALAKVAVEQPGKRSAAIRGSYEGM
Ga0209176_100259374	3300025854	Arctic Peat Soil	MIKSDAQRERTVAQIAGFRQALAKVEREAPGKRAAAVRGS
Ga0209840_10611001	3300026223	Soil	MIKSDAQRERTVAQIAGFRQALAKVEREAPGKRAAAVRGSYEG
Ga0209648_105417762	3300026551	Grasslands Soil	VIKSDAQRERTVVQVEGFRQALAKVEEGTSRKRSKAVRGSYESMIRQ
Ga0209330_11087181	3300027619	Forest Soil	MIKSDAQRERTAAQIEGFRQGLTKVDREMTGKRAIAVRGSYE
Ga0209208_100860843	3300027807	Host-Associated	MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEKLT
Ga0209726_103955981	3300027815	Groundwater	MIKSDAQRERTVAQIEGFRQALAKAEREMPGKRFAAVRGSYQSMIQQLED
Ga0209112_100780351	3300027817	Forest Soil	MIKSDAQRERTAAQIEGFRQALATVDREMTGKRAAAVRG
Ga0268264_122582411	3300028381	Switchgrass Rhizosphere	MIKSDAQRERTLAQIEGFRQALAKTEREMTGKRAAAVRGSYEG
Ga0137415_103212534	3300028536	Vadose Zone Soil	MIKSDAQRERTAAQIEGFRQALNKANGEMTGKRAGAVRGSYEGMI
Ga0302144_101161082	3300028560	Bog	MIKSDAQRDRTLAQIEGFRRALATAEQEKRGKRSAAVRGSYE
Ga0302199_12650931	3300028860	Bog	MIKSDAQRDRTLAQIEGFRRALATAEQEKRGKRSAAVRG
Ga0302218_100601483	3300028863	Palsa	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLEDELR
Ga0308309_109638061	3300028906	Soil	MIKSDAQRERTAAQIEGFRQALAKVDQEMTGKRAGAVR
Ga0308309_110202831	3300028906	Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMMRQLEDELR
Ga0222749_104005033	3300029636	Soil	MIKSDAQRERTVAQIEGFRQALTKVAREMTAKRAIAVRGSYEGMIRQLE
Ga0311362_112493422	3300029913	Bog	MIKSDAQRERTAAQIEGFRQALTKVDREMNGKRAIAVRGSYEGMIRQLED
Ga0311363_116053662	3300029922	Fen	MMIKSDAQRERTAAQIDGFRQALAKAEQEMTGKRAAAVRGSYE
Ga0311330_106689812	3300029945	Bog	MIKSDAQRERTAAQLEGFRQAIARVDREMTGKRAVAVRGSYEGTIRQLEDEIREY
Ga0311346_111837011	3300029952	Bog	MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAILGSYAGMIR
Ga0302280_12098321	3300029985	Fen	MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRADAVRGSYESM
Ga0311334_116766142	3300029987	Fen	MIKSDAQRDRTLAQIEGFRRALAKADEEKPGKRSAAI
Ga0311339_113448321	3300029999	Palsa	MMIKSDAQRERTAAQIDGFRQALAKAEQEMTGKRAAA
Ga0311337_115606691	3300030000	Fen	MIKTDAQRARTATQIEGFRRALAEAVSAGGSRNRVNALRGSYEAMIRQLEEEIEEYD
Ga0302306_102494502	3300030043	Palsa	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYESMIRQL
Ga0311356_120595101	3300030617	Palsa	MIKSDAQRDRTLAQIEGFRQALAKAGQEKPGKRAAAIRGSYQG
Ga0311345_106610841	3300030688	Bog	MIKSDAQRQRTAAQIEGFRQALTKVDREMTGKRAIAVRGSYEGMIRQLED
Ga0170823_170681611	3300031128	Forest Soil	MIKSDAQRERTAAQLEGFRQALNKVDREMTGKRAVAVRGS
Ga0302324_1020280623	3300031236	Palsa	MIKSDAQKERTAAQIEGFRQALAKAEREMAGKRAVAIRESYEGMIRQLEDDMRDL
Ga0170820_125063393	3300031446	Forest Soil	MIKSDAQRERAAAQLEGFRLALNKVDREMTGKRAGAVR
Ga0311364_109242161	3300031521	Fen	MIKSDAQRERTRVQIEGFRKALAQVEEQTSGKRSEAVRTSYESMIRQLE
Ga0311364_113347061	3300031521	Fen	MIKSDAQRDRTVAQIEGFRRALAKAEVDEPGKRSAAIRGSYEGMIRQLE
Ga0302320_120338721	3300031524	Bog	MIKSDAQRERTAAQIEGFRQALTKVDREMNGKRAIAV
Ga0310686_1007917572	3300031708	Soil	MIKSDAQRERTVARIEGFHQALAKVDREMTGKRAVAVRGSYEGMI
Ga0307476_114355952	3300031715	Hardwood Forest Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLED
Ga0307478_118231322	3300031823	Hardwood Forest Soil	MIKSDAQRERTAAQIDGFRQALTKVDREMTGKRAIAVR
Ga0306926_109348652	3300031954	Soil	MIKSDAQRERTVAQIEGFRRALAKVAEERAGKGSAAVRGSLKG
Ga0307479_121381542	3300031962	Hardwood Forest Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLEDDL
Ga0318562_101104374	3300032008	Soil	MIKSDAQRERTAAQIEGFRQARAKVDREMTGKRATAVR
Ga0335078_112401601	3300032805	Soil	MIKSDTQRERTVAQIEGFRRALAKVAEEKPGKRSASI
Ga0335078_119496891	3300032805	Soil	MIKSDAQRDRTLAQIEGFRRALAKAEQEKRDKRSAAV
Ga0335083_107641753	3300032954	Soil	MIKSDAQRERTATQIEGFRQALAKVRDGKPDKRSAAIRGSYESMIRQLE
Ga0335073_102184824	3300033134	Soil	MIKSDAQRERTFAQIEGFRQALAKVASEKPGKRSAAIRGSYEGMIRQ
Ga0335077_118510302	3300033158	Soil	MIKSDAQRERTLAQIEGFRQAIAKVASEKPGKRAAAIRGSY
Ga0316626_114049212	3300033485	Soil	MIKSDAQRERTIVQIEGFRKALAQAEEQMSDKRAAAVRA
Ga0334792_167934_1_117	3300033888	Soil	MIKSDAQRDRTVAQIEGFRRALAKADVEEPGKRSAAIRG
Ga0370514_093257_2_148	3300034199	Untreated Peat Soil	MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRALAVRGSYEGMIRQLE
Ga0372943_0893066_2_130	3300034268	Soil	MIKSDAQRERTAAQIEGFRQALAKVTQDKPNKRSAAVRGSYES
Ga0370481_0347371_2_112	3300034281	Untreated Peat Soil	MIKSDAQRERTMAQIEGFRQALAKVAKDTPAKRSAAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079165

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences