Basic Information | |
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Family ID | F079165 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 44 residues |
Representative Sequence | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYE |
Number of Associated Samples | 107 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 97.41 % |
% of genes near scaffold ends (potentially truncated) | 96.55 % |
% of genes from short scaffolds (< 2000 bps) | 94.83 % |
Associated GOLD sequencing projects | 104 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.54 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (98.276 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.207 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.414 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.690 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Anaerobic Enrichment Culture Freshwater Sediment Peatland Bog Forest Soil Bog Peatland Groundwater Iron-Sulfur Acid Spring Groundwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Arctic Peat Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Untreated Peat Soil Tropical Peatland Fen Bog Soil Tropical Forest Soil Forest Soil Soil Soil Fen Palsa Bog Termite Gut Switchgrass Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Avena Fatua Rhizosphere Host-Associated |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1045482201 | 3300000364 | Soil | MIKSDAQRERTIAQIEGFRRALAEVAEEKRGRRSAAIRGSY |
Ga0062441_11041661 | 3300003889 | Anaerobic Enrichment Culture | MIKSDAQRDRTLAQIAGFRQALAKVELESTGRRSAAIRGSYEGMIR |
Ga0062386_1017272741 | 3300004152 | Bog Forest Soil | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAILGSYEGMIR |
Ga0066674_103719711 | 3300005166 | Soil | MIKSDAQRDGTLAQIEGFRQALAKVEQEKPGKRSAAIRGSYESMIRQLEDE |
Ga0070731_100342337 | 3300005538 | Surface Soil | MIKSDAQRERTTAQIEGFRQALAKVDREMTGKRAAAVRGSYEGMIRQLE |
Ga0070763_106172292 | 3300005610 | Soil | MIKSDAQRERTAAQVEGFRQALTKVDREMAGKRAMAVR |
Ga0070763_107412752 | 3300005610 | Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVR |
Ga0068859_1021295592 | 3300005617 | Switchgrass Rhizosphere | MIKSDAQRERTAAQIEGFRVALNKVDREMTGKRAETVRGSYEGMIRQ |
Ga0066903_1079833831 | 3300005764 | Tropical Forest Soil | MIKSDAERERTVAQIEGFRRALAKVAEEKPAKRSAAVRGSYEGMIRQLEEE |
Ga0075018_102026131 | 3300006172 | Watersheds | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRATAVRGSYEGMM |
Ga0099829_112597912 | 3300009038 | Vadose Zone Soil | MIKSDAQRERTVAQIEGFRQALAKVEEGTSRKRSKAVR |
Ga0099830_118698322 | 3300009088 | Vadose Zone Soil | MNMIKSDAQRARTLAQIEGLRQALGKVEKERPGKRSA |
Ga0099792_111341512 | 3300009143 | Vadose Zone Soil | MIKSDAQRARTVAQIEGFRQALGKVELERPGKRSDAIRGSYEG |
Ga0105248_111236183 | 3300009177 | Switchgrass Rhizosphere | MIKSDAQRERTVAQIEGFQQALAKVGEGKPDKRSA |
Ga0116229_103217792 | 3300009500 | Host-Associated | MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEK* |
Ga0116230_101213853 | 3300009510 | Host-Associated | MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEKLT* |
Ga0105237_125809252 | 3300009545 | Corn Rhizosphere | MIKSDAQRERTEAQIKGFQQALAKVDREMTGKRAT |
Ga0105238_121092741 | 3300009551 | Corn Rhizosphere | MIKSDAQRERTAAQIEGFRVALNKVDREMTGKRAETVRGSYEGMIRQL |
Ga0116113_11476042 | 3300009638 | Peatland | MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRADAVRGSYESMIRQLEDELH |
Ga0116215_14846451 | 3300009672 | Peatlands Soil | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGSYE |
Ga0123356_127879352 | 3300010049 | Termite Gut | MIKNDAQRVRTVAQIEGFRRALAKVDEEKPGKRSRAVRGSYEGMLRQ |
Ga0126378_117825311 | 3300010361 | Tropical Forest Soil | MIKSDAQRERTVTQIEGFRRALAKVAEDKPGKRSDAIRGSYEGMIRQLED |
Ga0126379_122666833 | 3300010366 | Tropical Forest Soil | MIKSDAQRDRTLAQIEGFRQALAKAEQERAGRRFAALRGS |
Ga0126379_128071821 | 3300010366 | Tropical Forest Soil | MIKSDEQRERTVAQIEGFRRALAKAADEKAGKRSAAIRGSYEGMIRQL |
Ga0136449_1020254471 | 3300010379 | Peatlands Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAV |
Ga0136847_112164791 | 3300010391 | Freshwater Sediment | MIKSDAQRERTLAQIEGFRKALAKVEQEAHGKRSKAI |
Ga0138525_10075531 | 3300011064 | Peatlands Soil | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSA |
Ga0137389_117053682 | 3300012096 | Vadose Zone Soil | MIKSEAQRERTVVRIEGFKQALAKAPRDKHGKRSVAIRGSYESMIRQL |
Ga0137379_106780022 | 3300012209 | Vadose Zone Soil | MIKSDAQRDRTLAQIEGFRRALAMAEQAKPGTRSAAIRGSYEGMIGQLEEEL |
Ga0137379_108650293 | 3300012209 | Vadose Zone Soil | MIKSDAQRDRTVAQIEDFRRALAKAEVEEPGKRSGAIRGSY |
Ga0137370_101343434 | 3300012285 | Vadose Zone Soil | MIKSDAQRDRTLAQIEGFRQALAKVEQEKPGKRSAAIRGS |
Ga0137360_102702954 | 3300012361 | Vadose Zone Soil | MIKSDAQRERIAAQIEGFRQALAKTEREMTGKRAAAVRGSYEGMIRQLEDE |
Ga0137390_106547121 | 3300012363 | Vadose Zone Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYEGMIRQLEDELR |
Ga0150984_1196722811 | 3300012469 | Avena Fatua Rhizosphere | MIKSDAQRDRTVAQIEGFRRALGKAEQEKPGKRSAVIRGSY |
Ga0137410_100211039 | 3300012944 | Vadose Zone Soil | MIKSDAQRERTAAQIAGFRQALAQVDQDMTGKRASAARGSYEGMIRQLE |
Ga0126369_113676671 | 3300012971 | Tropical Forest Soil | MIKSDAQRDRTLAQIEGFRRALVKVTDEKPGKRSAAIRGSYEGMIRQLEEELR |
Ga0181528_103481703 | 3300014167 | Bog | VIKSDAQRDRTLAQIEGFRRALAKQQEKPGKRSVAIRGSYE |
Ga0181526_110009852 | 3300014200 | Bog | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYE |
Ga0182014_105770441 | 3300014491 | Bog | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAVRGSYEGMI |
Ga0182013_105947792 | 3300014492 | Bog | MIKSDAQRDRTVAQIEGFRRALAKAEVEEPGKRSA |
Ga0182019_108875961 | 3300014498 | Fen | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGSYEGMIRQLED |
Ga0182019_113319571 | 3300014498 | Fen | MIKSDAQRDRTIAQIEGFRRALAKAEVDEPGKRSVAIRGSYEGMIRQLEDE |
Ga0181516_103120171 | 3300014655 | Bog | MIKSDAQRDRTLAQIEGFRRALAKADEDTPGKRSAAIRGSYESMIRQLEDEL |
Ga0182030_104693804 | 3300014838 | Bog | MIKSEAQRERTMTQMAGFRQALAKVARDKPGRRSAAIRASYEGMIRQ |
Ga0182030_111889271 | 3300014838 | Bog | MDTIKSDAQRERTAAQLAGFRRALTRVQPDAARKRSAAVRASYE |
Ga0157376_115806471 | 3300014969 | Miscanthus Rhizosphere | MIKSEAQRDRTLTQIEGFRQALSKVDREKPGKRSMAIRGSYEGMIRQLEDDL |
Ga0137409_110759812 | 3300015245 | Vadose Zone Soil | MIKSDAQRERTAAQIEGFRQALAKVDQEMAGKRAGAVRDSYEG |
Ga0182036_113186231 | 3300016270 | Soil | MIKSDAQRERTAAQIEGFRRALTKVAQEKAGRRSAAIRGSYEGMI |
Ga0187853_103970722 | 3300017940 | Peatland | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAA |
Ga0187850_103839931 | 3300017941 | Peatland | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRRAAVRGS |
Ga0187847_101205523 | 3300017948 | Peatland | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVHGSYEGMIRQLENELLE |
Ga0187847_103369002 | 3300017948 | Peatland | VIKSDAQRDRTLAQIEGFRRALAKQQEKPGKRSVAIRG |
Ga0187875_107736772 | 3300018035 | Peatland | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAIRGS |
Ga0184628_104068352 | 3300018083 | Groundwater Sediment | MIKSDAQRERTVAQIEGFHQALAKVGDGKADKRSAAVRGSYQ |
Ga0187772_111690741 | 3300018085 | Tropical Peatland | MIKTEAQRNRTLVQIEGFRRALGQAAEELSGKRAAAV |
Ga0066655_105687561 | 3300018431 | Grasslands Soil | MIKSDAQRERTVVQIEGFQRALAELGERKLDKRSAAIR |
Ga0210401_102795893 | 3300020583 | Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMMRQL |
Ga0154015_15876281 | 3300020610 | Corn, Switchgrass And Miscanthus Rhizosphere | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAAAVRGSYEGMIRQLEEE |
Ga0210405_105403941 | 3300021171 | Soil | MIKSDAQRERTVAQIEGFRQALTKVDREMTGKRATAV |
Ga0210408_106293633 | 3300021178 | Soil | MIKSDAQRDRALAQIEGFRQALDTAKAELSGTRARAVVGSHEGMILQLEAEVRE |
Ga0210393_103735181 | 3300021401 | Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRSS |
Ga0210397_108907861 | 3300021403 | Soil | MIKSDAQRERTASQIEGFRQALVKVEREMTGKRAAAVRGSYE |
Ga0210383_108820032 | 3300021407 | Soil | MIKSDAQRERTTAQIEGFRQALTKVDREMTGKRATAVRSSYEGMMRQL |
Ga0210384_101619335 | 3300021432 | Soil | MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRAG |
Ga0210410_114032792 | 3300021479 | Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMA |
Ga0210409_112058052 | 3300021559 | Soil | MIKSDAQRERTVAQIEGFRQALTKVDREMTGKRATAVRGSY |
Ga0242651_10352861 | 3300022511 | Soil | MIKSDAQRERAAAQIEGFRVALNKVDREMTGKRADAVRGSYAGMIRQLEDELR |
Ga0212123_104484914 | 3300022557 | Iron-Sulfur Acid Spring | MIKSDAQRERTVVQIEGFRQALAKVAVEQPGKRSAAIRGSYEGM |
Ga0209176_100259374 | 3300025854 | Arctic Peat Soil | MIKSDAQRERTVAQIAGFRQALAKVEREAPGKRAAAVRGS |
Ga0209840_10611001 | 3300026223 | Soil | MIKSDAQRERTVAQIAGFRQALAKVEREAPGKRAAAVRGSYEG |
Ga0209648_105417762 | 3300026551 | Grasslands Soil | VIKSDAQRERTVVQVEGFRQALAKVEEGTSRKRSKAVRGSYESMIRQ |
Ga0209330_11087181 | 3300027619 | Forest Soil | MIKSDAQRERTAAQIEGFRQGLTKVDREMTGKRAIAVRGSYE |
Ga0209208_100860843 | 3300027807 | Host-Associated | MIRSDAQRDRTGFQIEGFRGAIAQAEREMSGARAKAVRGSYEGMIRQLEKLT |
Ga0209726_103955981 | 3300027815 | Groundwater | MIKSDAQRERTVAQIEGFRQALAKAEREMPGKRFAAVRGSYQSMIQQLED |
Ga0209112_100780351 | 3300027817 | Forest Soil | MIKSDAQRERTAAQIEGFRQALATVDREMTGKRAAAVRG |
Ga0268264_122582411 | 3300028381 | Switchgrass Rhizosphere | MIKSDAQRERTLAQIEGFRQALAKTEREMTGKRAAAVRGSYEG |
Ga0137415_103212534 | 3300028536 | Vadose Zone Soil | MIKSDAQRERTAAQIEGFRQALNKANGEMTGKRAGAVRGSYEGMI |
Ga0302144_101161082 | 3300028560 | Bog | MIKSDAQRDRTLAQIEGFRRALATAEQEKRGKRSAAVRGSYE |
Ga0302199_12650931 | 3300028860 | Bog | MIKSDAQRDRTLAQIEGFRRALATAEQEKRGKRSAAVRG |
Ga0302218_100601483 | 3300028863 | Palsa | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLEDELR |
Ga0308309_109638061 | 3300028906 | Soil | MIKSDAQRERTAAQIEGFRQALAKVDQEMTGKRAGAVR |
Ga0308309_110202831 | 3300028906 | Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMMRQLEDELR |
Ga0222749_104005033 | 3300029636 | Soil | MIKSDAQRERTVAQIEGFRQALTKVAREMTAKRAIAVRGSYEGMIRQLE |
Ga0311362_112493422 | 3300029913 | Bog | MIKSDAQRERTAAQIEGFRQALTKVDREMNGKRAIAVRGSYEGMIRQLED |
Ga0311363_116053662 | 3300029922 | Fen | MMIKSDAQRERTAAQIDGFRQALAKAEQEMTGKRAAAVRGSYE |
Ga0311330_106689812 | 3300029945 | Bog | MIKSDAQRERTAAQLEGFRQAIARVDREMTGKRAVAVRGSYEGTIRQLEDEIREY |
Ga0311346_111837011 | 3300029952 | Bog | MIKSDAQRDRTLAQIEGFRRALAKAEQEKPGKRSAAILGSYAGMIR |
Ga0302280_12098321 | 3300029985 | Fen | MIKSDAQRERTAAQIEGFRQALAKVDREMTGKRADAVRGSYESM |
Ga0311334_116766142 | 3300029987 | Fen | MIKSDAQRDRTLAQIEGFRRALAKADEEKPGKRSAAI |
Ga0311339_113448321 | 3300029999 | Palsa | MMIKSDAQRERTAAQIDGFRQALAKAEQEMTGKRAAA |
Ga0311337_115606691 | 3300030000 | Fen | MIKTDAQRARTATQIEGFRRALAEAVSAGGSRNRVNALRGSYEAMIRQLEEEIEEYD |
Ga0302306_102494502 | 3300030043 | Palsa | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRAIAVRGSYESMIRQL |
Ga0311356_120595101 | 3300030617 | Palsa | MIKSDAQRDRTLAQIEGFRQALAKAGQEKPGKRAAAIRGSYQG |
Ga0311345_106610841 | 3300030688 | Bog | MIKSDAQRQRTAAQIEGFRQALTKVDREMTGKRAIAVRGSYEGMIRQLED |
Ga0170823_170681611 | 3300031128 | Forest Soil | MIKSDAQRERTAAQLEGFRQALNKVDREMTGKRAVAVRGS |
Ga0302324_1020280623 | 3300031236 | Palsa | MIKSDAQKERTAAQIEGFRQALAKAEREMAGKRAVAIRESYEGMIRQLEDDMRDL |
Ga0170820_125063393 | 3300031446 | Forest Soil | MIKSDAQRERAAAQLEGFRLALNKVDREMTGKRAGAVR |
Ga0311364_109242161 | 3300031521 | Fen | MIKSDAQRERTRVQIEGFRKALAQVEEQTSGKRSEAVRTSYESMIRQLE |
Ga0311364_113347061 | 3300031521 | Fen | MIKSDAQRDRTVAQIEGFRRALAKAEVDEPGKRSAAIRGSYEGMIRQLE |
Ga0302320_120338721 | 3300031524 | Bog | MIKSDAQRERTAAQIEGFRQALTKVDREMNGKRAIAV |
Ga0310686_1007917572 | 3300031708 | Soil | MIKSDAQRERTVARIEGFHQALAKVDREMTGKRAVAVRGSYEGMI |
Ga0307476_114355952 | 3300031715 | Hardwood Forest Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLED |
Ga0307478_118231322 | 3300031823 | Hardwood Forest Soil | MIKSDAQRERTAAQIDGFRQALTKVDREMTGKRAIAVR |
Ga0306926_109348652 | 3300031954 | Soil | MIKSDAQRERTVAQIEGFRRALAKVAEERAGKGSAAVRGSLKG |
Ga0307479_121381542 | 3300031962 | Hardwood Forest Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMAGKRAMAVRGSYEGMIRQLEDDL |
Ga0318562_101104374 | 3300032008 | Soil | MIKSDAQRERTAAQIEGFRQARAKVDREMTGKRATAVR |
Ga0335078_112401601 | 3300032805 | Soil | MIKSDTQRERTVAQIEGFRRALAKVAEEKPGKRSASI |
Ga0335078_119496891 | 3300032805 | Soil | MIKSDAQRDRTLAQIEGFRRALAKAEQEKRDKRSAAV |
Ga0335083_107641753 | 3300032954 | Soil | MIKSDAQRERTATQIEGFRQALAKVRDGKPDKRSAAIRGSYESMIRQLE |
Ga0335073_102184824 | 3300033134 | Soil | MIKSDAQRERTFAQIEGFRQALAKVASEKPGKRSAAIRGSYEGMIRQ |
Ga0335077_118510302 | 3300033158 | Soil | MIKSDAQRERTLAQIEGFRQAIAKVASEKPGKRAAAIRGSY |
Ga0316626_114049212 | 3300033485 | Soil | MIKSDAQRERTIVQIEGFRKALAQAEEQMSDKRAAAVRA |
Ga0334792_167934_1_117 | 3300033888 | Soil | MIKSDAQRDRTVAQIEGFRRALAKADVEEPGKRSAAIRG |
Ga0370514_093257_2_148 | 3300034199 | Untreated Peat Soil | MIKSDAQRERTAAQIEGFRQALTKVDREMTGKRALAVRGSYEGMIRQLE |
Ga0372943_0893066_2_130 | 3300034268 | Soil | MIKSDAQRERTAAQIEGFRQALAKVTQDKPNKRSAAVRGSYES |
Ga0370481_0347371_2_112 | 3300034281 | Untreated Peat Soil | MIKSDAQRERTMAQIEGFRQALAKVAKDTPAKRSAAI |
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