3300003882: Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0108_20120607_metagen

Overview

Basic Information

• IMG/M Taxon OID: 3300003882
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113941 | Gp0109645 | Ga0063280
• Sample Name: Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0108_20120607_metagen
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 227447075
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Plastic Marine Debris Microbial Communities From The Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Plastic Marine Debris Microbial Communities From The Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → manufactured plastic
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 35.55167
  • Long. (^o): -65.65833
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F065810	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0063280_1002965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	17490
Ga0063280_1065398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	2372

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063280_1002965	Ga0063280_10029659	F001506	MNRIRFKGRDRFGRLPQNRWIYLDKEETTLIKKRKPTRRSKGKPLQYPKLAETEVKSKTFQIKYYGQLSLAAKFILNSFQNKYIYYAMDDILYQFGLKPTEYETLLAILYSPVLSLQNNYFINFFDIWITEVYLKEVSKTNKFLTKTSETYEQISYITIKFVYTTRVPVKKPDPLW*
Ga0063280_1065398	Ga0063280_10653986	F065810	FQYPKSREILAKSFQIKYDKKLPLISKFILNSFQNKYIYYAIDDILYKLSSVPSERDNLLAILYSPIISLQNNFSVNFFDIWIRQISIEEIDQPNKFLVANDPNLKKTTYITIQFFYKTKLSVKKQNSLW*