3300003844: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003844
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103144 | Ga0056914
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 371042174
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014467	Metagenome / Metatranscriptome	263	Y
F016391	Metagenome / Metatranscriptome	247	Y
F026170	Metagenome	199	Y
F034766	Metagenome / Metatranscriptome	174	Y
F058255	Metagenome	135	Y
F061953	Metagenome / Metatranscriptome	131	Y
F069722	Metagenome / Metatranscriptome	123	Y
F084316	Metagenome / Metatranscriptome	112	Y
F088924	Metagenome	109	Y
F104545	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0056914_10000918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22746
Ga0056914_10006663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	5523
Ga0056914_10024895	All Organisms → cellular organisms → Bacteria	1893
Ga0056914_10035735	All Organisms → cellular organisms → Bacteria	1440
Ga0056914_10035988	All Organisms → cellular organisms → Bacteria	1434
Ga0056914_10036324	All Organisms → cellular organisms → Bacteria	1425
Ga0056914_10056377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1031
Ga0056914_10089281	All Organisms → cellular organisms → Bacteria	742
Ga0056914_10104083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0056914_10000918	Ga0056914_100009183	F084316	VGKFEVGDRVIVNEGDFKGDRGTITDKDLIGDEIKVALEEDGREIDTHEAHVSLLERED*
Ga0056914_10006055	Ga0056914_100060552	F088924	MTCDDRPIVKQIGFACLASSALLSVFSRTTDKSVCVTLSAFLCFLCGFTQAAEPLKLLFAGSSSMYWNDLPREVAKIVDGKIAGHIGEQVIPEAVGRSGSDIRVYLEPGFNRYEYGVKPGQSFLDKIATEKPDIVPMMVVCRFIMGDDAPKNGNPDHATSITRYCEAIRAAGGEPMFYEMGWGKTEREAEGRQRILELAKKNQITLFAPCSTAWARVYAEKPDLALQHPKDNAHPGDAGHFLNLACFYAALTRESPVGKLPRTFHVWPHGKYDAYEAKLATFQPDAYQAAMAKWMRKHMAMNQTGTLDEETATYLETVAWETWNDVSKRLQVR*
Ga0056914_10006663	Ga0056914_100066634	F016391	MSDSYLRYTDLATAIQLARANGMTTAQIIRALTGSMTHADALKLARMAAPLLDISVQMFMQLRKNEA*
Ga0056914_10024895	Ga0056914_100248954	F069722	MRVRLTAELDPKAKRERPALKMCAAHEKALGHGSGAALQEG*
Ga0056914_10035735	Ga0056914_100357351	F026170	MPGMARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVDPGVQKGLAMALRETNNMLPRRKRVK*
Ga0056914_10035988	Ga0056914_100359882	F034766	MPDAPRKYLMITPDQVRSARRFWPQVSDKTWCLVFRRGEEPMVLNKAPHRGVGFVTVEVPTPEQTKEGMYYRRDMDVLILVAGETDLVRV*
Ga0056914_10036324	Ga0056914_100363242	F014467	MRKTTGTVIVAVAALALGSSALATMEIQKEYKAKDPKASCASCHVDKMPKKEKHEMNDFGKKVLEAKGKDGKIDWAKVPAAK*
Ga0056914_10056377	Ga0056914_100563772	F104545	MTAKDIRVGKDQPIRTGTAQHARQRIVGQQAGIDCDAATRAVRVPMGSGQPDDVEPVDTILRPVGRRKTFRDVLASIGRVRQRLEMARVPKPYQHAVIKVAVQKSDR*
Ga0056914_10089281	Ga0056914_100892812	F061953	KMPGTCDSCGESAAELLSVGTVVDYAFRPEYRFCRSCYDRYGGRHDDLHQKAVAEQQLPPLISRPDSLEDVPE*
Ga0056914_10104083	Ga0056914_101040831	F058255	FSDPPLTREELRSDQKSLQALYDALAEGYRLPPARVELSSRRATGGVIQYGPPHVIRVSAHMSAADRRQTLLHETAHAICHDRWGVDEGHSSRFWEIARELGVTRKSAPETDRLATIRARNARYTYRCLGCAEEWTRRSPFGRARLCASCEGKGRPSRLILVRRPKRAARLKR*