3300003795: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08

Overview

Basic Information

• IMG/M Taxon OID: 3300003795
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110170 | Gp0088315 | Ga0007853
• Sample Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33494381
• Sequencing Scaffolds: 44
• Novel Protein Genes: 50
• Associated Families: 43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18
Not Available	15
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F006264	Metagenome / Metatranscriptome	377	Y
F007405	Metagenome	351	Y
F009598	Metagenome / Metatranscriptome	315	Y
F010616	Metagenome / Metatranscriptome	301	Y
F010743	Metagenome / Metatranscriptome	299	Y
F011749	Metagenome	287	Y
F012199	Metagenome	282	Y
F012318	Metagenome / Metatranscriptome	281	Y
F016248	Metagenome	248	Y
F018879	Metagenome / Metatranscriptome	232	N
F020299	Metagenome	224	Y
F021463	Metagenome	218	Y
F021910	Metagenome	216	Y
F022576	Metagenome	213	Y
F023544	Metagenome / Metatranscriptome	209	Y
F025204	Metagenome / Metatranscriptome	202	Y
F025723	Metagenome / Metatranscriptome	200	Y
F031338	Metagenome	182	Y
F031676	Metagenome / Metatranscriptome	182	Y
F032633	Metagenome / Metatranscriptome	179	Y
F033290	Metagenome	177	Y
F034043	Metagenome / Metatranscriptome	175	N
F035159	Metagenome	172	Y
F040411	Metagenome	161	N
F043202	Metagenome	156	Y
F044911	Metagenome	153	Y
F049374	Metagenome	146	N
F056409	Metagenome / Metatranscriptome	137	Y
F057849	Metagenome	135	N
F059611	Metagenome	133	Y
F066475	Metagenome	126	Y
F069617	Metagenome / Metatranscriptome	123	N
F076852	Metagenome	117	N
F079515	Metagenome / Metatranscriptome	115	N
F079605	Metagenome / Metatranscriptome	115	Y
F083594	Metagenome	112	N
F086791	Metagenome	110	N
F087179	Metagenome	110	Y
F088232	Metagenome / Metatranscriptome	109	Y
F089762	Metagenome / Metatranscriptome	108	N
F096526	Metagenome	104	N
F104339	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0007853_1000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	46752
Ga0007853_1000589	Not Available	3825
Ga0007853_1001709	All Organisms → cellular organisms → Bacteria	1904
Ga0007853_1001936	All Organisms → Viruses → Predicted Viral	1754
Ga0007853_1002128	All Organisms → cellular organisms → Bacteria → Proteobacteria	1636
Ga0007853_1002337	All Organisms → cellular organisms → Bacteria	1531
Ga0007853_1002403	All Organisms → Viruses → Predicted Viral	1502
Ga0007853_1002645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1403
Ga0007853_1003777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1084
Ga0007853_1003907	Not Available	1062
Ga0007853_1003978	All Organisms → cellular organisms → Bacteria	1049
Ga0007853_1004032	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1040
Ga0007853_1004034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1040
Ga0007853_1004134	Not Available	1023
Ga0007853_1004218	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1011
Ga0007853_1004589	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	959
Ga0007853_1004727	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	940
Ga0007853_1005072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	897
Ga0007853_1005425	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	862
Ga0007853_1005675	All Organisms → cellular organisms → Bacteria	839
Ga0007853_1006427	Not Available	780
Ga0007853_1006646	Not Available	765
Ga0007853_1007305	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	723
Ga0007853_1007369	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	719
Ga0007853_1007399	Not Available	717
Ga0007853_1007577	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	707
Ga0007853_1007689	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	701
Ga0007853_1008087	Not Available	682
Ga0007853_1009007	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	642
Ga0007853_1009655	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	619
Ga0007853_1009769	Not Available	615
Ga0007853_1009931	Not Available	609
Ga0007853_1010397	Not Available	594
Ga0007853_1010448	Not Available	593
Ga0007853_1010735	Not Available	583
Ga0007853_1010858	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	580
Ga0007853_1011380	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	565
Ga0007853_1011626	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	559
Ga0007853_1011846	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	553
Ga0007853_1012190	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	545
Ga0007853_1012634	Not Available	534
Ga0007853_1013014	Not Available	525
Ga0007853_1013211	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	522
Ga0007853_1013800	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007853_1000001	Ga0007853_100000134	F025204	MSAMDPITTARELATHANDIQHLQGDMDKMVDEMKQIKEAVQAIQKTLAEAHGGWRLLLGVGGAAALIGAIMANLFQGFWSK*
Ga0007853_1000001	Ga0007853_10000015	F096526	VRKIKVHFPWLEVPAQGGFFVPTLKFEEVRVNGLKAALYHRVQAKAEIGRKNGKMGVWFTRVR*
Ga0007853_1000589	Ga0007853_10005892	F049374	LQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1000589	Ga0007853_10005894	F012318	MAYNSAFSPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDATSTPVVTAPALTVPSANTLYIPANGVAVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1001629	Ga0007853_10016291	F049374	MMFKVVVGTGGAASGSITLPTAVNGWLAFAADVTNGSTLFLQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1001709	Ga0007853_10017094	F020299	MYKEGRQFVVDAKKEIDGVVKDVKGIQKDAKGIWGFLTGLFGGVKQENQQKIVEKPAKKAKQKVEFDENQIYAQVADALTKFFHAYNGLKNYAKEQEEL
Ga0007853_1001936	Ga0007853_10019363	F040411	MTEEEILAEMEKIREAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*
Ga0007853_1002128	Ga0007853_10021282	F001774	MALKLKLEQTQFGVPAPKAYARITNFFGTKDNIQVQVAIHYDENARQTNMATVREDAHYIAIESLKGDIIPAIYGVLKTFSQYEGAEDC*
Ga0007853_1002337	Ga0007853_10023375	F079515	NSGNSQTTPSVNTGFAANGFLPADRTTPSATTGDVRGTIDLANASGVNLTPSTGTNKYVFRQIPQAYNVQSATGLFGLTQYYNF*
Ga0007853_1002403	Ga0007853_10024033	F057849	MGKIQEWYDSWLLEQAKQAVANGDFKPRPPKYIFPSDIVMALRMQAEECENNERDPLTGISTWPKETTLEWQAADLIDEQFAEIQHYEKLREDMVELWIQMRESLGGDHDETMA*
Ga0007853_1002645	Ga0007853_10026453	F021463	MNAEALENRVVRLEFKTDNHEDEIKELRKSANDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGXDRAIKLLFGG*
Ga0007853_1003777	Ga0007853_10037772	F059611	MKDFSLPFLVSKRLLDEYYKAMIAQDRQKAYQIANDLVEMTLKLEDIAHANA*
Ga0007853_1003907	Ga0007853_10039072	F083594	VIWNRSFGDNYGSSSLGTPSFGGHYRPFDYDFGFNSIKRDVRLDNVESHVGESGNSSNICSIQLPYSQCKREETK*
Ga0007853_1003978	Ga0007853_10039781	F031676	MVANMKKQPQQLSREAIEEFKAIYQEEFGEVLSDDEVREIATRLLRFFGVLNKE*
Ga0007853_1004032	Ga0007853_10040321	F069617	CPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI
Ga0007853_1004034	Ga0007853_10040342	F087179	MRYEQSKPLVEDLMDIAVLFHASPSLLRQKIAEAINKHIPDLDPACMERGCLCIDTFSKEEKNT*
Ga0007853_1004134	Ga0007853_10041342	F089762	MVQTYSSLLEYEIGRLIDEAIADELAILANGNVDDIKDYKLRVGMIRGLQKAKELMSEADSNIQSGERG*
Ga0007853_1004218	Ga0007853_10042184	F069617	GRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1004589	Ga0007853_10045891	F032633	PDDTFSELVVRTAARNGQVICSFTPLKGLTGLVRKFWDQVEGYCHVRVTWDDVPYVNEWDEPFFTKEEREQLSRDFMPWERDCRMKGIPLVGQGVVFPILDWPTYKSTDIDLRDNEKLERLISFDLGIKNDPTVISFFFRDPVEEIIYLQRQIKIPAGETPDEYVHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDNYGLNCIPGAILNPVNDQGKVTNHKAYGINIMRMGFERKTFMINENCKAFLDECRNYAIDSQGRFSDPDDHIDSARIGILALIQGHGESVVSRANNFEMRRFTPIEGKVQRI*
Ga0007853_1004727	Ga0007853_10047272	F089762	MAQTYSSLLEYEIGRLLDEAIADETSILATGNIEDIKDYKFRVGMIRGFHRAKEFISEADRIIQSGERG*
Ga0007853_1005072	Ga0007853_10050721	F012199	MSEYTRIRTPFLNMSFTPDVPSNALGANEYNSGLNVEADVRGIKKVSGEQAILSAIPGNVFYMDGGFRDQATWVYVAATTQGKWYMITASGITNITPGVGANPNVSLSGYTNDTNVVSDWVGGVVFINDTLRAPMYFRPTDTEIQLYDTAPDNFVWNYESGLSPAVTSVTAGFVRNYCSPNVGNILVAGNLTKTYSTGTTINYPTTIRWSQAFANTGVPATWLPTLNNVANEQEVPVRGPIIDGFFLGANFYVCSYWDTVVLTPIAYQN
Ga0007853_1005425	Ga0007853_10054251	F021910	MGMNRADAYYEPDNYDDRSDEIEERTWQLLKVGGKFDYRTSGAISEALSEMGVDDSKALQDAIDSGDYEQLGRKLISMACEYMEGHAKEVAEFEIND*
Ga0007853_1005675	Ga0007853_10056752	F010743	MENLELELKLTVAHVNTVLKHLSAGVYAEVVDLIGLLHAQAKPQVEAATPPSENTPAEPAPEAPAAQ*
Ga0007853_1006427	Ga0007853_10064271	F031338	VRTLYIIPFLSANGNVPSPFNSPISSAPITCTPCRLKNFNIQIGGQNIFSEPQNYNYQFYNNNALSIMADINGNSLKSKFFSGQITKSMWENGYNVYTINLEKCTDEITDSLMKSFQLIFQIENSAITGISYDFYYMITYQSELSLDRSTGTITNTV*
Ga0007853_1006451	Ga0007853_10064513	F104339	NRKNDTMNDYADTVLRLNRLTKLFLNSILKARKTEAYLIACQITETAQELEDWASKNSVH
Ga0007853_1006646	Ga0007853_10066463	F086791	MAKASNFLMSMYCGDTLLDVYGYVDKDEPSVGHVGGIDIEDVCIADTEISVWEMIHALDFDKFDKQAQESWRG*
Ga0007853_1007305	Ga0007853_10073052	F007405	MVVTISPSHSFTYDGAQLNIYHADKGEGLPKHEHNFCHATMCNSGSCLVSLEGRNYTINKFSQPLNLPANEWHQIEALENNTVFVNVFAEGKY*
Ga0007853_1007369	Ga0007853_10073691	F035159	IVITPTNVKNGGDDAPWTREELKRLKGIQKKLRLAEAKRIAALKADQEARKQTITDLVNPKPVAKTQQSNIQSNQEVSVDIPSNLANIDRYIANLEQQQQDLQNAVLIRSAKLRLEQELAILEAKRQAELDDEEALLAIIL*
Ga0007853_1007399	Ga0007853_10073993	F022576	MTIDLNEHMEQKKQERHAKAYDAIGSAVDGMTIGTILHILSVFTATVLDQMNEPDRSQAAMVFSSVIMESN
Ga0007853_1007577	Ga0007853_10075772	F044911	MTPSEQLHLDAARYATNRKNAYVEAMKKGDVPHMSDEDLNGRWLAHYEGYREGYWVAIGDIKFTTDPLKEKNT*
Ga0007853_1007689	Ga0007853_10076892	F016248	MTKELSPLARSLLGNNGAVKFFTQQEFDDALALAKAEIMTVAIETTKRAIMIEREECAKLADECVNIEELGEVIRNRI
Ga0007853_1008087	Ga0007853_10080872	F088232	MANTQAYFGFTQYQGGAGGAPTFAQSTRRIASGNSTAIYTGDPVNFVSAANGYIQQAAAGTTPLAGIFV
Ga0007853_1009007	Ga0007853_10090072	F079605	TASSRVANTTSQKAGTITLSRERVQAIRDAGAWDDVEKRNKMIRAYAQYDRANKE*
Ga0007853_1009655	Ga0007853_10096551	F001774	MALRLSVATQFGVPAEEAYAKITNFYGTKDQLQVQVAIYFNENARHQNMSTVKENAHYIAMEDLKGDLIPAIYGVLKTFEQ
Ga0007853_1009769	Ga0007853_10097691	F076852	MVDVDRLKKDGKTKYVKLLGKGILTLVDHLFWNLPFCSVKQSQAVRKKAGVTEEERSTKWEEIVAEHDLPGALEQLASGWKEYLGKRAGDAARGAGAVRPACLSTVVLDTP*
Ga0007853_1009931	Ga0007853_10099311	F056409	MKPMTDYEKRLTAKNILAACKDINKLNKRGYAFLNVASGFIAHYDINGFKHYYQREGKLQQDIERNAKANQWTNFRAGDEHADYYHAKRDCYNQILGGLVAREYIDTLF
Ga0007853_1010397	Ga0007853_10103971	F033290	MTKEEIIEMVMQIGGCERPEDDSPALKMFIDFAKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRAR
Ga0007853_1010448	Ga0007853_10104481	F043202	MATKKAKPYYVADTGFFGAKVFICFSDASFQQALRDSKITTRHSALDEGIAESHYIQQEGTHYSMLAIVFNFEDMAKEDALERMGTIYHEVSHTVTHIFQHIGEDETKIGDESRSYLGEHLFKQVFSAYATEEDKRERAGERNRKVLDKKNQAVIGALLQMAE
Ga0007853_1010735	Ga0007853_10107351	F069617	MTPEEMSKVICPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1010858	Ga0007853_10108581	F018879	GDFNYTYQIDDSWVMDQTGSDNTSALFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAAVSSTGAAVTTPRPSAQVQRYLA*
Ga0007853_1010858	Ga0007853_10108582	F023544	MGLNANNEEALVNEDYYTKGILEAGVDAVLRKNNKLFNEVKSGTWSQNFNTGNLKYKVGAIDGERYVQYEQMN
Ga0007853_1011380	Ga0007853_10113801	F006264	MEDFSAKFQQKLSGQAEVCARKTLEWLQKDLQGDRQLTPADVYYLSKAADVLLTIRDDYGKK*
Ga0007853_1011380	Ga0007853_10113802	F010616	VHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVVGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGERLMRKADGSFTKEGRGMYAYCVGEKGGGIWPLIDKEAVRISEKNIANPWA
Ga0007853_1011626	Ga0007853_10116261	F009598	MLDKQNVVVQNLASGEGKRSVVEKIAHEVYLKMVDYLRLTQAKNTLNRFNDYHYLTIPVSESTEPIRGIDYIHPVVAPGIDYATAIITKCLMPDGKVNFEFQKTHDNDEGAQQSTEMVMRMINNKNDSYALIRDWAQDGLLHKNGIVMVMPI
Ga0007853_1011846	Ga0007853_10118462	F025723	FIAVCRDDPIVIPQYDMNQQVVGSYTERPLLGFCWFDRGGYTTYSNEEISNAKFHHIDLSLSPRTRVRLVNEMIDQHILWAHTYGIPIICSTSIRAEHNGFMKIHQKRGFTVNGSYAWIRTEEAMKCLINQ*
Ga0007853_1012190	Ga0007853_10121902	F012318	AAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDGTSTPVVTAPALTVPSYNTFYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1012634	Ga0007853_10126341	F066475	MTTPRDSGTRDRYMEASSDLAEHIGDKVLVLLRSPENQARIQSILDPIISHIINRIFPYILLSAILFLILFILTIGTFYMVMRTSGGAVGVTTVKLSD*
Ga0007853_1013014	Ga0007853_10130141	F034043	YGDLATSNDWTVFFELPDFKAFSIKHFPQDICQTTKQVDAFVISRSRKICFVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQLFGFTSKELKALVDECSLVSRRSSYYIWLNRFHQTFIPFQMVQVDIESYQSIAVV*
Ga0007853_1013211	Ga0007853_10132111	F011749	HINYVNLLPRRSTPPWWREAGESGTKQLYQPEPHQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCDEAGRPGTGSKLYYINSWAMCWPTDHPKKPLTG*
Ga0007853_1013800	Ga0007853_10138001	F040411	MTEQEILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*