Sample 3300003795

Basic Information
IMG/M Taxon OID	3300003795 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110170 \| Gp0088315 \| Ga0007853
Sample Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33494381
Sequencing Scaffolds	44
Novel Protein Genes	50
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18
Not Available	15
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F006264	Metagenome / Metatranscriptome	377	Y
F007405	Metagenome	351	Y
F009598	Metagenome / Metatranscriptome	315	Y
F010616	Metagenome / Metatranscriptome	301	Y
F010743	Metagenome / Metatranscriptome	299	Y
F011749	Metagenome	287	Y
F012199	Metagenome	282	Y
F012318	Metagenome / Metatranscriptome	281	Y
F016248	Metagenome	248	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0007853_1000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	46752	Open in IMG/M
Ga0007853_1000589	Not Available	3825	Open in IMG/M
Ga0007853_1001709	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
Ga0007853_1001936	All Organisms → Viruses → Predicted Viral	1754	Open in IMG/M
Ga0007853_1002128	All Organisms → cellular organisms → Bacteria → Proteobacteria	1636	Open in IMG/M
Ga0007853_1002337	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
Ga0007853_1002403	All Organisms → Viruses → Predicted Viral	1502	Open in IMG/M
Ga0007853_1002645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1403	Open in IMG/M
Ga0007853_1003777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1084	Open in IMG/M
Ga0007853_1003907	Not Available	1062	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007853_1000001	Ga0007853_100000134	F025204	MSAMDPITTARELATHANDIQHLQGDMDKMVDEMKQIKEAVQAIQKTLAEAHGGWRLLLGVGGAAALIGAIMANLFQGFWSK*
Ga0007853_1000001	Ga0007853_10000015	F096526	VRKIKVHFPWLEVPAQGGFFVPTLKFEEVRVNGLKAALYHRVQAKAEIGRKNGKMGVWFTRVR*
Ga0007853_1000589	Ga0007853_10005892	F049374	LQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1000589	Ga0007853_10005894	F012318	MAYNSAFSPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDATSTPVVTAPALTVPSANTLYIPANGVAVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1001629	Ga0007853_10016291	F049374	MMFKVVVGTGGAASGSITLPTAVNGWLAFAADVTNGSTLFLQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1001709	Ga0007853_10017094	F020299	MYKEGRQFVVDAKKEIDGVVKDVKGIQKDAKGIWGFLTGLFGGVKQENQQKIVEKPAKKAKQKVEFDENQIYAQVADALTKFFHAYNGLKNYAKEQEEL
Ga0007853_1001936	Ga0007853_10019363	F040411	MTEEEILAEMEKIREAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*
Ga0007853_1002128	Ga0007853_10021282	F001774	MALKLKLEQTQFGVPAPKAYARITNFFGTKDNIQVQVAIHYDENARQTNMATVREDAHYIAIESLKGDIIPAIYGVLKTFSQYEGAEDC*
Ga0007853_1002337	Ga0007853_10023375	F079515	NSGNSQTTPSVNTGFAANGFLPADRTTPSATTGDVRGTIDLANASGVNLTPSTGTNKYVFRQIPQAYNVQSATGLFGLTQYYNF*
Ga0007853_1002403	Ga0007853_10024033	F057849	MGKIQEWYDSWLLEQAKQAVANGDFKPRPPKYIFPSDIVMALRMQAEECENNERDPLTGISTWPKETTLEWQAADLIDEQFAEIQHYEKLREDMVELWIQMRESLGGDHDETMA*
Ga0007853_1002645	Ga0007853_10026453	F021463	MNAEALENRVVRLEFKTDNHEDEIKELRKSANDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGXDRAIKLLFGG*
Ga0007853_1003777	Ga0007853_10037772	F059611	MKDFSLPFLVSKRLLDEYYKAMIAQDRQKAYQIANDLVEMTLKLEDIAHANA*
Ga0007853_1003907	Ga0007853_10039072	F083594	VIWNRSFGDNYGSSSLGTPSFGGHYRPFDYDFGFNSIKRDVRLDNVESHVGESGNSSNICSIQLPYSQCKREETK*
Ga0007853_1003978	Ga0007853_10039781	F031676	MVANMKKQPQQLSREAIEEFKAIYQEEFGEVLSDDEVREIATRLLRFFGVLNKE*
Ga0007853_1004032	Ga0007853_10040321	F069617	CPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI
Ga0007853_1004034	Ga0007853_10040342	F087179	MRYEQSKPLVEDLMDIAVLFHASPSLLRQKIAEAINKHIPDLDPACMERGCLCIDTFSKEEKNT*
Ga0007853_1004134	Ga0007853_10041342	F089762	MVQTYSSLLEYEIGRLIDEAIADELAILANGNVDDIKDYKLRVGMIRGLQKAKELMSEADSNIQSGERG*
Ga0007853_1004218	Ga0007853_10042184	F069617	GRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1004589	Ga0007853_10045891	F032633	PDDTFSELVVRTAARNGQVICSFTPLKGLTGLVRKFWDQVEGYCHVRVTWDDVPYVNEWDEPFFTKEEREQLSRDFMPWERDCRMKGIPLVGQGVVFPILDWPTYKSTDIDLRDNEKLERLISFDLGIKNDPTVISFFFRDPVEEIIYLQRQIKIPAGETPDEYVHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDNYGLNCIPGAILNPVNDQGKVTNHKAYGINIMRMGFERKTFMINENCKAFLDECRNYAIDSQGRFSDPDDHIDSARIGILALIQGHGESVVSRANNFEMRRFTPIEGKVQRI*
Ga0007853_1004727	Ga0007853_10047272	F089762	MAQTYSSLLEYEIGRLLDEAIADETSILATGNIEDIKDYKFRVGMIRGFHRAKEFISEADRIIQSGERG*
Ga0007853_1005072	Ga0007853_10050721	F012199	MSEYTRIRTPFLNMSFTPDVPSNALGANEYNSGLNVEADVRGIKKVSGEQAILSAIPGNVFYMDGGFRDQATWVYVAATTQGKWYMITASGITNITPGVGANPNVSLSGYTNDTNVVSDWVGGVVFINDTLRAPMYFRPTDTEIQLYDTAPDNFVWNYESGLSPAVTSVTAGFVRNYCSPNVGNILVAGNLTKTYSTGTTINYPTTIRWSQAFANTGVPATWLPTLNNVANEQEVPVRGPIIDGFFLGANFYVCSYWDTVVLTPIAYQN
Ga0007853_1005425	Ga0007853_10054251	F021910	MGMNRADAYYEPDNYDDRSDEIEERTWQLLKVGGKFDYRTSGAISEALSEMGVDDSKALQDAIDSGDYEQLGRKLISMACEYMEGHAKEVAEFEIND*
Ga0007853_1005675	Ga0007853_10056752	F010743	MENLELELKLTVAHVNTVLKHLSAGVYAEVVDLIGLLHAQAKPQVEAATPPSENTPAEPAPEAPAAQ*
Ga0007853_1006427	Ga0007853_10064271	F031338	VRTLYIIPFLSANGNVPSPFNSPISSAPITCTPCRLKNFNIQIGGQNIFSEPQNYNYQFYNNNALSIMADINGNSLKSKFFSGQITKSMWENGYNVYTINLEKCTDEITDSLMKSFQLIFQIENSAITGISYDFYYMITYQSELSLDRSTGTITNTV*
Ga0007853_1006451	Ga0007853_10064513	F104339	NRKNDTMNDYADTVLRLNRLTKLFLNSILKARKTEAYLIACQITETAQELEDWASKNSVH
Ga0007853_1006646	Ga0007853_10066463	F086791	MAKASNFLMSMYCGDTLLDVYGYVDKDEPSVGHVGGIDIEDVCIADTEISVWEMIHALDFDKFDKQAQESWRG*
Ga0007853_1007305	Ga0007853_10073052	F007405	MVVTISPSHSFTYDGAQLNIYHADKGEGLPKHEHNFCHATMCNSGSCLVSLEGRNYTINKFSQPLNLPANEWHQIEALENNTVFVNVFAEGKY*
Ga0007853_1007369	Ga0007853_10073691	F035159	IVITPTNVKNGGDDAPWTREELKRLKGIQKKLRLAEAKRIAALKADQEARKQTITDLVNPKPVAKTQQSNIQSNQEVSVDIPSNLANIDRYIANLEQQQQDLQNAVLIRSAKLRLEQELAILEAKRQAELDDEEALLAIIL*
Ga0007853_1007399	Ga0007853_10073993	F022576	MTIDLNEHMEQKKQERHAKAYDAIGSAVDGMTIGTILHILSVFTATVLDQMNEPDRSQAAMVFSSVIMESN
Ga0007853_1007577	Ga0007853_10075772	F044911	MTPSEQLHLDAARYATNRKNAYVEAMKKGDVPHMSDEDLNGRWLAHYEGYREGYWVAIGDIKFTTDPLKEKNT*
Ga0007853_1007689	Ga0007853_10076892	F016248	MTKELSPLARSLLGNNGAVKFFTQQEFDDALALAKAEIMTVAIETTKRAIMIEREECAKLADECVNIEELGEVIRNRI
Ga0007853_1008087	Ga0007853_10080872	F088232	MANTQAYFGFTQYQGGAGGAPTFAQSTRRIASGNSTAIYTGDPVNFVSAANGYIQQAAAGTTPLAGIFV
Ga0007853_1009007	Ga0007853_10090072	F079605	TASSRVANTTSQKAGTITLSRERVQAIRDAGAWDDVEKRNKMIRAYAQYDRANKE*
Ga0007853_1009655	Ga0007853_10096551	F001774	MALRLSVATQFGVPAEEAYAKITNFYGTKDQLQVQVAIYFNENARHQNMSTVKENAHYIAMEDLKGDLIPAIYGVLKTFEQ
Ga0007853_1009769	Ga0007853_10097691	F076852	MVDVDRLKKDGKTKYVKLLGKGILTLVDHLFWNLPFCSVKQSQAVRKKAGVTEEERSTKWEEIVAEHDLPGALEQLASGWKEYLGKRAGDAARGAGAVRPACLSTVVLDTP*
Ga0007853_1009931	Ga0007853_10099311	F056409	MKPMTDYEKRLTAKNILAACKDINKLNKRGYAFLNVASGFIAHYDINGFKHYYQREGKLQQDIERNAKANQWTNFRAGDEHADYYHAKRDCYNQILGGLVAREYIDTLF
Ga0007853_1010397	Ga0007853_10103971	F033290	MTKEEIIEMVMQIGGCERPEDDSPALKMFIDFAKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRAR
Ga0007853_1010448	Ga0007853_10104481	F043202	MATKKAKPYYVADTGFFGAKVFICFSDASFQQALRDSKITTRHSALDEGIAESHYIQQEGTHYSMLAIVFNFEDMAKEDALERMGTIYHEVSHTVTHIFQHIGEDETKIGDESRSYLGEHLFKQVFSAYATEEDKRERAGERNRKVLDKKNQAVIGALLQMAE
Ga0007853_1010735	Ga0007853_10107351	F069617	MTPEEMSKVICPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1010858	Ga0007853_10108581	F018879	GDFNYTYQIDDSWVMDQTGSDNTSALFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAAVSSTGAAVTTPRPSAQVQRYLA*
Ga0007853_1010858	Ga0007853_10108582	F023544	MGLNANNEEALVNEDYYTKGILEAGVDAVLRKNNKLFNEVKSGTWSQNFNTGNLKYKVGAIDGERYVQYEQMN
Ga0007853_1011380	Ga0007853_10113801	F006264	MEDFSAKFQQKLSGQAEVCARKTLEWLQKDLQGDRQLTPADVYYLSKAADVLLTIRDDYGKK*
Ga0007853_1011380	Ga0007853_10113802	F010616	VHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVVGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGERLMRKADGSFTKEGRGMYAYCVGEKGGGIWPLIDKEAVRISEKNIANPWA
Ga0007853_1011626	Ga0007853_10116261	F009598	MLDKQNVVVQNLASGEGKRSVVEKIAHEVYLKMVDYLRLTQAKNTLNRFNDYHYLTIPVSESTEPIRGIDYIHPVVAPGIDYATAIITKCLMPDGKVNFEFQKTHDNDEGAQQSTEMVMRMINNKNDSYALIRDWAQDGLLHKNGIVMVMPI
Ga0007853_1011846	Ga0007853_10118462	F025723	FIAVCRDDPIVIPQYDMNQQVVGSYTERPLLGFCWFDRGGYTTYSNEEISNAKFHHIDLSLSPRTRVRLVNEMIDQHILWAHTYGIPIICSTSIRAEHNGFMKIHQKRGFTVNGSYAWIRTEEAMKCLINQ*
Ga0007853_1012190	Ga0007853_10121902	F012318	AAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDGTSTPVVTAPALTVPSYNTFYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1012634	Ga0007853_10126341	F066475	MTTPRDSGTRDRYMEASSDLAEHIGDKVLVLLRSPENQARIQSILDPIISHIINRIFPYILLSAILFLILFILTIGTFYMVMRTSGGAVGVTTVKLSD*
Ga0007853_1013014	Ga0007853_10130141	F034043	YGDLATSNDWTVFFELPDFKAFSIKHFPQDICQTTKQVDAFVISRSRKICFVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQLFGFTSKELKALVDECSLVSRRSSYYIWLNRFHQTFIPFQMVQVDIESYQSIAVV*
Ga0007853_1013211	Ga0007853_10132111	F011749	HINYVNLLPRRSTPPWWREAGESGTKQLYQPEPHQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCDEAGRPGTGSKLYYINSWAMCWPTDHPKKPLTG*
Ga0007853_1013800	Ga0007853_10138001	F040411	MTEQEILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*

Showing 1 to 50 of 50 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003795: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences