3300003765: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003765
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103141 | Ga0056911
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118237500
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007648	Metagenome	347	Y
F100264	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0056911_1001915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5062
Ga0056911_1002914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	3153
Ga0056911_1005137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1944
Ga0056911_1007080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1567
Ga0056911_1007259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1544
Ga0056911_1008904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1359
Ga0056911_1013369	All Organisms → cellular organisms → Bacteria	1062
Ga0056911_1039277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0056911_1001915	Ga0056911_10019156	F007648	MTIQHTPEQEIWVMTTEGANITGYNSRYLQQLAKKNAQLPDNERFIKVRMRSNRHELWLPDLLHYIDEIGYGPHQNKK*
Ga0056911_1002914	Ga0056911_10029145	F007648	MAIQITPEQEIWVTTTEGRELTGYNRQYVEKLANKNWRLPEDERLIKLRKRSGRFELWLPDLLRYIDEVGYGPHQDKA*
Ga0056911_1005137	Ga0056911_10051372	F007648	MTPEGAELTGYSREYLERLAYKNLRLPDDERLIKTRKRVGRYEMWLPDLLRYIDEIGYGPHQNKK*
Ga0056911_1007080	Ga0056911_10070803	F007648	MAVEITPEQEIWVTTREGAAATGYNSQYLEKLANKNSRLPEAERLIKIRKRSGLFYELWLPDLLRYIDEIGYGPHQK*
Ga0056911_1007259	Ga0056911_10072593	F007648	MAREITPDQEIWVMTKEAAEITGYNHEYMEILGKKNFRLPENERLIKIRKRSGRFYELWLPDLLRYIDEIGYGPHKNK*
Ga0056911_1008904	Ga0056911_10089042	F007648	MAKAITPEQEIWVMTTEGAELTGYNRYYLEKLSKKLSQLPEDQRVIKWRKRLGRHELWLPDLLRYMDESGYGPHAKK*
Ga0056911_1013369	Ga0056911_10133692	F100264	MSHGKTATGNNMLLSLASTLVVGYLTTRFRFFRFMWRFMPLLVVVSAWFMNRQAETVSEQESDERVKEPAA*
Ga0056911_1039277	Ga0056911_10392771	F007648	MAREFTPDQEIWVMTAEAAQITGYNRQYIEKLSKKNWLLPEDERLFKLRRRSGHYYEIWLPDLLRYIDETGYGPHKNK*