3300003733: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003733
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088392 | Ga0008273
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29331086
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	3
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000200	Metagenome / Metatranscriptome	1633	Y
F000820	Metagenome / Metatranscriptome	878	Y
F000948	Metagenome / Metatranscriptome	823	Y
F001099	Metagenome / Metatranscriptome	778	Y
F002698	Metagenome / Metatranscriptome	536	Y
F003068	Metagenome / Metatranscriptome	509	Y
F003495	Metagenome / Metatranscriptome	483	Y
F006114	Metagenome / Metatranscriptome	381	Y
F012018	Metagenome / Metatranscriptome	284	Y
F027881	Metagenome / Metatranscriptome	193	Y
F030104	Metagenome / Metatranscriptome	186	Y
F039672	Metagenome / Metatranscriptome	163	N
F056191	Metagenome / Metatranscriptome	138	Y
F070259	Metagenome / Metatranscriptome	123	Y
F074917	Metagenome / Metatranscriptome	119	N
F081370	Metagenome / Metatranscriptome	114	Y
F089411	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008273_1001365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	5280
Ga0008273_1001907	All Organisms → cellular organisms → Bacteria	1019
Ga0008273_1003037	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	597
Ga0008273_1004459	Not Available	979
Ga0008273_1004709	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	779
Ga0008273_1005485	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	578
Ga0008273_1006961	Not Available	557
Ga0008273_1007844	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1061
Ga0008273_1008811	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	548
Ga0008273_1012754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	745
Ga0008273_1014025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	615
Ga0008273_1019631	Not Available	628
Ga0008273_1020510	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	507
Ga0008273_1021853	Not Available	530
Ga0008273_1023384	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	597
Ga0008273_1030847	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008273_1001365	Ga0008273_10013651	F074917	MRFAKTKRQKPASSLTTKAKDKLDTIRQNPINQQKKQCGDRCHYKYSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHSSHRYLPIQVLINQDTAINTLRFPWVFDQANG
Ga0008273_1001907	Ga0008273_10019072	F070259	MKSESLVIVNHHVTVNDLSNFAHTAHHARRVVSAGHLSDC*
Ga0008273_1002718	Ga0008273_10027181	F000055	MKYSAIVLLVAAASAMTVSQDSTKPPPPTAADTPSSGYYGADEDDVMNNIFNHYAVPITNAAGQATGAKVLYKDGCQKAAAEILLVSKQVSEAKMESYMAEFFPRTWAKFDINNAGEIDITESHTFMRSLLGRLNQFVLAPGSLTDLKV*
Ga0008273_1003037	Ga0008273_10030371	F001099	MKFTAIFAIAAVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008273_1004459	Ga0008273_10044591	F027881	ILHKFFVMSLTVARSERVRGVLTHASFTRIKFNLSSARVSNAL*
Ga0008273_1004709	Ga0008273_10047091	F039672	MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEVTLDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGSGSGDKSAISQ
Ga0008273_1005485	Ga0008273_10054851	F000948	SAAAMHLENAMSAMTETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008273_1006961	Ga0008273_10069611	F056191	LCEARVRHALTAEMFKTLPSWGSMHASVKLEGIDGRAPQERVEHVA*
Ga0008273_1007844	Ga0008273_10078441	F081370	MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFIERRFHFY
Ga0008273_1008811	Ga0008273_10088112	F006114	MNAQQSLKRISSAFQAKPKQDKVSDMAQKLGIPMTPELMQLGSNEAISNALVEIAVGMGKTEEEISAALGSD
Ga0008273_1012754	Ga0008273_10127541	F002698	VKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
Ga0008273_1014025	Ga0008273_10140251	F003068	ISANSAVYGASGKETNRAEDNTVKTIKNESGVFTDSHMSGFLELNVGEFVSLGFEHTPDSITTPENQRTTNRNNTAGTSSTTRVSADFNDLNIAYLKLNIPGGVYLKAGYVETDVDVKETMASGSTYNNVSTEGTLVGVGFSKALGERGIAIRLEGSYMDLDDVTSSNGVSATGGSSANGGRNQIDISNMEGLNGKIALTYTFG
Ga0008273_1014616	Ga0008273_10146161	F000200	KVYDFKCTEGHLFEDFVSGGVTTSRCSCGAKATKVVSATKCVLEGASGDFPGRHMKWVREHEMAGRK*
Ga0008273_1019631	Ga0008273_10196311	F089411	MSQLKIKQIEGLQTKLESIDSQLASGSLKSSYEQAAHGFAAGNVIAFFNGSWVLADSKTADKLGRLVVEEATDDSNFIAVQIGNIEVSTWNLTPGTFYVVDDSDSGSIAEFVNASQPAYAYSNPVLQAISATKAQVLPWRPSLGPTQVAQGTEYTQADLTPLASNGDESATGITLDYTPFADSTVQVYINGVAVTE
Ga0008273_1020510	Ga0008273_10205102	F003495	QASMKENREKKIKNEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGT*
Ga0008273_1021853	Ga0008273_10218531	F012018	KKIVILSAVFFSGLAVAQGLPRFGSARFAEAQFGVAEPALPVPFMPLWATITLAVSLWVVAYLMRAKEA*
Ga0008273_1023384	Ga0008273_10233841	F000820	ITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADG
Ga0008273_1030847	Ga0008273_10308471	F030104	TILFILLYWTMAIMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCLKHSIHYFAFLEASVVEGRTVGFIAKQFFRDFLNTFSLILRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTLLFTLDNHDDRSFLLEDENDFSNDFFYTYFVV*