3300003716: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003716
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088400 | Ga0008281
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13397653
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. AE2015	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → Viruses → Predicted Viral	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F001099	Metagenome / Metatranscriptome	778	Y
F002730	Metagenome / Metatranscriptome	534	Y
F002870	Metagenome / Metatranscriptome	524	Y
F006699	Metagenome / Metatranscriptome	366	Y
F022639	Metagenome / Metatranscriptome	213	N
F030104	Metagenome / Metatranscriptome	186	Y
F039672	Metagenome / Metatranscriptome	163	N
F048370	Metagenome / Metatranscriptome	148	Y
F049593	Metagenome / Metatranscriptome	146	N
F056191	Metagenome / Metatranscriptome	138	Y
F063741	Metagenome / Metatranscriptome	129	N
F081370	Metagenome / Metatranscriptome	114	Y
F088979	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008281_100175	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	646
Ga0008281_100176	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	987
Ga0008281_102063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Butyrivibrio → unclassified Butyrivibrio → Butyrivibrio sp. AE2015	616
Ga0008281_102322	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	707
Ga0008281_102720	All Organisms → Viruses → Predicted Viral	1864
Ga0008281_103268	Not Available	513
Ga0008281_103462	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	607
Ga0008281_103614	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1041
Ga0008281_104628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	928
Ga0008281_105379	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	568
Ga0008281_106685	Not Available	800
Ga0008281_106884	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	883
Ga0008281_107862	Not Available	524
Ga0008281_110197	Not Available	596
Ga0008281_115362	Not Available	710

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008281_100175	Ga0008281_1001751	F002870	VEAASVESAQSLVQQALLNVEAGSAAAMHLENAMSAMTETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008281_100176	Ga0008281_1001761	F002870	QALLNVEAGSAAAMHLENAMSAMSETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008281_102063	Ga0008281_1020631	F088979	IMSEEFSCSMDGYVSLTNQLIELSLVGLALVKETYAAILGEKLGKSVQYAWDGLVGAGSWAGFAVAALYYFGLDYGYADYMCEYSSYGYMAIDWLSFLIDFSGGEEAEE*
Ga0008281_102182	Ga0008281_1021821	F000055	KYSAIVLLVAAASAMTVSQDSTKPPPPTAADTPSSGYYGADEDDVMNNIFNHYAVPITNAAGQATGAKVLYKDGCQKAAAEILLVSKQVSEAKMESYMAEFFPRTWAKFDINNAGEIDITESHTFMRSLLGRLNQFVLAPGSLTDLKV*
Ga0008281_102322	Ga0008281_1023221	F039672	MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEIALDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGVSSHIWESSNV
Ga0008281_102720	Ga0008281_1027201	F049593	KDKEMDKELQDYYETLLDLFASKGWKQYIEDISDNMDILQDITTIPDEKQFWFRRGQIEAVQRVLSYESAIKNSYEDFEREVNA*
Ga0008281_102720	Ga0008281_1027202	F022639	MPKRIYEFICGDDHLTEAYIDSELRTTNCKVCGQPAIRIVSKPMVKLEGVTGDFPGAAMQWERKRNEKMAQERKSAAEN*
Ga0008281_103268	Ga0008281_1032681	F056191	LYLGIVRGVFARIGRALTAEMYETFPSGGSMHASVKLEGIDGRAPQERVEHV
Ga0008281_103462	Ga0008281_1034621	F001099	TAIFAIAAVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008281_103614	Ga0008281_1036141	F081370	MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFI
Ga0008281_104628	Ga0008281_1046281	F063741	DYQILAAPVNDCGSGDWSYYTVSVNEPQKAPLRMGSVRGPSEVCEGQEYTYTTSEGMDVYVWYVPTDVEILKKDDQVLKVKWGSTSGEVTVMGELDGTRYSNSSLYVVATGAPGVTINDEGKTNEEAAEAKTITLDYYPVTLEEANVAVDAANASVAAAHENKETYLLQANNELVLLEAALQNGIEEVSGNTTNWLLNLLGKALFLFVMSLLLGIALNFMVVWTSKYFGGLYDMDQDGTTYFKDTLTEYEGKYDGFPYVGLFTLVALIAVGSYFGYELASEYEKYLENDSWPTLMEYIGDKLP*
Ga0008281_105379	Ga0008281_1053791	F000088	HLSNECYGADEDDIMYDVFERYRVEEKNPLGAGTGVWKLPKGSGPQWAADIVRRFHVMDDDKVNDYVAANFDNFWKKYDNNGTGEIYESEGETFMRALLGPNNRFRLAPGALSDLDSTAQIHQNQFSKTPDIKTFTVSPTAYGVAAAPAAAATTE*
Ga0008281_106685	Ga0008281_1066851	F006699	VTMLRRYDYKCTVCFRTEEHWADSSDYEFSTCDDCGETSVRIISPVRTRFVGHGWPDKDDRWAKDHERAARK*
Ga0008281_106884	Ga0008281_1068842	F030104	MSREVRIQFEAMLQTVLFVLLYWTMAIMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCLKHSVHYFAFLEASVVEGRTAGFIAKQFLRDFINTFSLMLRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNNDDRSFLLEDENDFSNDLFYTYFVLWGKLYL
Ga0008281_107862	Ga0008281_1078621	F002730	LEGLDGVLEDWLDGLHDTESSLHIVDLWLHALDGLHLSGDLDEWLSIIKSLEDSSGKGLLDVL
Ga0008281_110197	Ga0008281_1101971	F006699	LRRYDYKCTTCKHIEEQWADSKDNQFSTCFECGETSERIISPVRTHFVGHGWPDKDDRWAKDHERAARK*
Ga0008281_115362	Ga0008281_1153621	F048370	MWDMNNRTTEEQARINCDRSNGKNTGVEDTATFDDDYDVAIRLAGSGVVYDFARPNNTTVGSS*