3300003705: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003705
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103008 | Gp0088354 | Ga0008094
• Sample Name: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5040885
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Amazon Forest, Brazil
• Coordinates
  • Lat. (^o): -10.0
  • Long. (^o): -62.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F001975	Metagenome / Metatranscriptome	609	Y
F003497	Metagenome / Metatranscriptome	483	Y
F007739	Metagenome / Metatranscriptome	345	Y
F026580	Metagenome / Metatranscriptome	197	Y
F039955	Metagenome / Metatranscriptome	162	Y
F052605	Metagenome / Metatranscriptome	142	Y
F056191	Metagenome / Metatranscriptome	138	Y
F059694	Metagenome / Metatranscriptome	133	Y
F062515	Metagenome / Metatranscriptome	130	Y
F074109	Metagenome / Metatranscriptome	120	N
F080954	Metagenome / Metatranscriptome	114	Y
F081396	Metagenome / Metatranscriptome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008094_100272	Not Available	665
Ga0008094_101074	Not Available	744
Ga0008094_101127	Not Available	579
Ga0008094_101327	Not Available	661
Ga0008094_101827	Not Available	571
Ga0008094_102046	Not Available	566
Ga0008094_102210	Not Available	575
Ga0008094_102714	Not Available	990
Ga0008094_102758	Not Available	562
Ga0008094_103955	Not Available	558
Ga0008094_104524	Not Available	511
Ga0008094_104592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642
Ga0008094_105994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	789
Ga0008094_107372	Not Available	621
Ga0008094_108101	Not Available	636

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008094_100272	Ga0008094_1002721	F080954	ERTFPATQEDEDSVEVEDSLRGANRGMQDSREAGTPIPGRAGDAKFGGRWSFVAG*
Ga0008094_100743	Ga0008094_1007432	F000203	GVRHALFPALAIRRALVEGAASFPTLFSTASGVFGLVAGPSSVLRALNFE*
Ga0008094_101074	Ga0008094_1010741	F081396	ERGLVADSKELEAGQEPRAGRSISGENDRASDRETLKITDEHDCDELDGRSGAERMMTSSAGSGERHLEEVKPRRGSSPIGG*
Ga0008094_101127	Ga0008094_1011271	F059694	MEFAKARAVAGEEKAVASERFRFGEKAKAAGRLKAMKRKPEKPASGEQRDEAYGAPERGVRYGACPWRARLGIGS
Ga0008094_101327	Ga0008094_1013272	F056191	LCEARVRHALTAEMSETFPSGGSMHASVKLKGIDGRAPQERVEHV
Ga0008094_101827	Ga0008094_1018271	F052605	AEQAAASKIEVVCSGIIPGDRGKVGSGWLTRLLINRSASFGEAEFTSSSGDGRTSSNANEELGGEGRLETVPNRVK*
Ga0008094_102046	Ga0008094_1020461	F001346	VKTFRKLGDIKNDTAELWKKSNLRVKRPDPWHQANALSKTVAVLAQEGEDVEKKLQPCLYLVRKPVAQPSVEAS*
Ga0008094_102210	Ga0008094_1022101	F026580	SEVVQAGFELGRIAVTQRVSGCYCVLARANDSGGLHSEVSQRKDAERRDKVSVRTGKDTRSRQDP*
Ga0008094_102714	Ga0008094_1027141	F039955	MGFFAALDSWLESLGRKTEDDSGFIQVIQYGSTKSYTFRRDVVRGNFLLPEIPDQGILIAVLRATQQFYLPDLSDEDFDNLHQMLILIDDVILGGLKDPSNWVLPRGFSDIPFVKSRLDKNYPIEQILEYMLAATRLYVWLYQHESETVSELIPHLLELEESFESLRTRNGVVDSSQGSALKY*
Ga0008094_102758	Ga0008094_1027581	F007739	KSKINEVRFKIIPGDWGKVRSGWLARLLLNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARSD*
Ga0008094_102758	Ga0008094_1027582	F062515	MLKTTPLDCETKGSLRVKRRDPWLGANAPSKTVADPKLVVKTR
Ga0008094_103955	Ga0008094_1039551	F003497	PLPDRHARSKHSSQRSGDVSLLLPVTALIPLRIGAPKPIRLVYLLEAYASEQPFARPQRLLSFESHRGKVSAPDLSLRRNSELFFQPVRPCTPTLDSVFRASRDARRTKPVAVSQAQNSQTSIQLSLPFGTFVPPDRSAQSAARSEKLTLVPGPFSLRSPKASITVNNYPPSDHRSRFATVHQAY
Ga0008094_104524	Ga0008094_1045241	F001758	VTGERLSQAGWLIPSKAGSQGSGEEAEFTSSSGDVRASSVNAKKGLSDEGR*
Ga0008094_104592	Ga0008094_1045921	F001975	KMASTSTQQELQDQFLSIVRKSQEIALDAIKSMVDTVQTIAPKIPSVDLPFAERLPKPQDVVAGGYDFAEKLLSSQRKFADEVVKATAPLLPGNGDSK*
Ga0008094_105994	Ga0008094_1059941	F001975	MPSTTTSTQQELQDQFLSIVRKSQEIALDAIKSMVDSVQTITPKIPSVDVPFADRLPKPQDVVASGYDFAEKLLSSQRKFADEVVKAAAPLLPGNGDSK*
Ga0008094_107372	Ga0008094_1073721	F039955	LGSKSEEQSVTIVQYGSTKSYTFRREAVMRGSFQLPELPDQGSAIAVLRATQLYYLPDLADEDFDNLSQMLILIDDVILAGLKDPTNWILPRGFSESPFVKQRLDKNYPIEQILATILTATRLYVWLYRNDEAVAELIPHLLELEESFESLRTRVCESNGMSRYAGNG*
Ga0008094_108101	Ga0008094_1081011	F074109	MDRLGTWEVPLTSTCERTGRSGRRLNNGPGPEVPSDLPGAQAAKHEARRIAWTPEAKQISDRICVAGSRSTSIVPVTSGNRTHRDPIEESGVPCGEN