3300003669: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Early Sample 3)

Overview

Basic Information

• IMG/M Taxon OID: 3300003669
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111460 | Gp0101224 | Ga0070396
• Sample Name: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Early Sample 3)
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169839258
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Croceicoccus → unclassified Croceicoccus → Croceicoccus sp. Ery15	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → coal mine → underground water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Lithgow
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003217	Metagenome / Metatranscriptome	500	Y
F009639	Metagenome / Metatranscriptome	315	Y
F027486	Metagenome	194	Y
F047236	Metagenome / Metatranscriptome	150	Y
F091027	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LSCM4E_1005313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Croceicoccus → unclassified Croceicoccus → Croceicoccus sp. Ery15	3109
LSCM4E_1016934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1292
LSCM4E_1019157	Not Available	1189
LSCM4E_1056294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637
LSCM4E_1081892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
LSCM4E_1005313	LSCM4E_10053139	F027486	MKAKRRTDDRIARSFRQDFPEFVARAEALGVRISLGEGRRNGRERVFWLDGYRQLTGYTTRSDGLPFTRLDAEKNIDKALTAIEEDRSEVASMTSDERFARIMGEFRKMKPQYRMIGEVRMPNGDRGHCFFMADYDGGVHLDGIGDVAKASAGWRQGETAADHLARFCSALESDFSARATTPATGEGSE*
LSCM4E_1016934	LSCM4E_10169342	F003217	MSDAGFVVQKVEWFQFRSPDGKAFFVMVSSLPNGFFTAVPCDLTMVRADHSLMALAATPGSTELIAPALDGAR
LSCM4E_1019157	LSCM4E_10191572	F009639	MRAWTVDADDIRVAEDFDAALLHRTPEIEEFLSHGGEKFVVIGTKGFGKTLLLKAKRVLTQRGG
LSCM4E_1056294	LSCM4E_10562942	F091027	RDLDDLVIERHDGVEWVRFGSHLHRPLPSVPVLSRGTSDVVTIGAEGHAEWRVVETDESPVEIAITTSGAWQLYDETFTSVANGRGSAVAALPGGGRVGYVTLFGDAGHTVTVAAR*
LSCM4E_1081892	LSCM4E_10818922	F047236	MPVEGRGLSSRPTQHASKDLEIGQPINSDKSSETTDGVTRKSEG