3300003666: Lithgow State Coal Mine Metagenomic Study (LSCM3 Early)

Overview

Basic Information

• IMG/M Taxon OID: 3300003666
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111460 | Gp0099526 | Ga0070393
• Sample Name: Lithgow State Coal Mine Metagenomic Study (LSCM3 Early)
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136762258
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin101	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum borinquense	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → coal mine → underground water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Lithgow
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F009968	Metagenome / Metatranscriptome	310	Y
F012172	Metagenome / Metatranscriptome	283	Y
F039988	Metagenome	162	N
F042353	Metagenome / Metatranscriptome	158	Y
F051949	Metagenome / Metatranscriptome	143	N
F064893	Metagenome / Metatranscriptome	128	Y
F072475	Metagenome / Metatranscriptome	121	N
F090615	Metagenome / Metatranscriptome	108	N
F101218	Metagenome / Metatranscriptome	102	Y
F103328	Metagenome / Metatranscriptome	101	N
F103497	Metagenome / Metatranscriptome	101	N
F104682	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
L3E_1000918	All Organisms → cellular organisms → Archaea	10549
L3E_1013156	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610
L3E_1016719	Not Available	1351
L3E_1020248	Not Available	1175
L3E_1028292	All Organisms → cellular organisms → Bacteria	923
L3E_1039695	All Organisms → cellular organisms → Bacteria	724
L3E_1045853	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin101	654
L3E_1047727	Not Available	636
L3E_1048535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	628
L3E_1055698	Not Available	572
L3E_1056861	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum borinquense	564
L3E_1058825	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
L3E_1000918	L3E_100091814	F101218	MSKRGPKPDLPRVKEPPPLPSLDELIAESRALGWDDLADSMEKLRHLETPKGQEALERREKRLSRL*
L3E_1013156	L3E_10131562	F090615	MRALQLAAPEPTDPTLIAALRVRKGWLKPDDSIVAKAADEGLTKMGVLLCPPPDPNGKSIPARLFNEIAADYLKAVPQARLLIEEATVEHQAFWNPDQPYVERTDADIQEDLVTAIKQANAVRLRAARAKAAAGS*
L3E_1016719	L3E_10167193	F009968	VNTCLGCRSHYRERHWWIFEIDFCGLDGDVVGFECPIGCIDTRGCSAYERRPAWPEGAIA
L3E_1016719	L3E_10167195	F051949	MFAHAGTARLDIFTDSLLLEVGEDLFLASLSRLSPLMQGRTAYCPLSRRYQGTAGHYCDVEQGIGLRRSKPGAALILIERGTIYSIPVVELREVLHGVRSECGISRVLTTEARMMEVGA*
L3E_1020248	L3E_10202483	F072475	MSESFASRFMTPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDADARRKQALMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP*
L3E_1025052	L3E_10250521	F103497	NYFEQNIHLATQIVNLLPQVFPGAPDIYVEDRDLERVDDLSKWIARTAEDVGIYPSMKASWIDTMSHGCSVKSAGYVFRNGRYEIDEIRDLPAITFRQPPRTLGMFQAPPNPLMPGIVYDSKEKRVRAFQTLDDTLALHELKNFTIIRDPSTPFPAGKAYCLPAYHVIGAIDHANKAADQQVHRVGAPLIFPQITETITADLKTWGDNFVRNWGKDTGFVIPPGVAFPDVKIRENQTAADRLKMLVSWLEVYFNPTTVLQSGAGTVIGASDSGAMRVWNNFIGGTQAWIEEQYEAFLQPVLTANGYDDLNVRIQLKRPELDRSEVIVNQLRVGIE
L3E_1028292	L3E_10282921	F001564	CPDAPDDGGRCDHCPLDRLDAAQSSDGGMLLRRASDLRAALRLGIHIDLNAIRADEFGAMQLLEEEVDQLERERVSRPV*
L3E_1039695	L3E_10396951	F064893	MSKIVRYEFMGSWLYFWLLSITVIGIPLALLYLISGTLRIEHHAIG
L3E_1045853	L3E_10458532	F042353	METRTPPTTLTGDACRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRLDDGRMVTLMPLDIPAETAVDLRLDIYDDHLAGGHGWREATVAEDYAEELGELTAAPWHPEPDTVEEARL*
L3E_1047727	L3E_10477271	F090615	PVVRAAPVPAPAQKPAPAASGTLTRNEKLVQMRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGALLCPPPDPEGKSIPAKLFNEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKMANADRLRAARAKTGS*
L3E_1048535	L3E_10485352	F039988	MKVLKCRLENYNDRKDGTVSLKLDSLLEVSDSDIAEIRGMRGNIAVAVITDVVDVLEAEINTKDIMENLPDDPFLDKRITPGQQQRRDLFVIQKLKLGRNPTKEEQAKFYIDRMAKIHEQNLEEIRELENINFKED*
L3E_1055698	L3E_10556981	F104682	MREIGIDRPKFDVKVNDRVFNMAFIPNLARKRYIDFWHRVEEVMEAMKIKNKKERQKAVDALSDDNEDEILKDIIRITLEANGYDYSEDWWESNTDSEMQLEFVRAVIEGADSGKKKVVNLLKA*
L3E_1056861	L3E_10568611	F103328	MFRKEDGAIDMVSLILTVVIAAVTMMVGLVVVANMESSMPDISGSALSTSLTNVMENTGTAFNFLALGLFVLAAVFIIGIVAGVLGGGQ*
L3E_1058825	L3E_10588252	F012172	MEAKRRALDEIAARQRAADEKRTEESQRERAVVVASPLVAVQ*