3300003660: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged)

Overview

Basic Information

• IMG/M Taxon OID: 3300003660
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111460 | Gp0101227 | Ga0070391
• Sample Name: Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged)
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 146176181
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter jiangxiensis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From The Lithgow State Coal Mine, New South Wales, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → coal mine → underground water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Lithgow
• Coordinates
  • Lat. (^o): -33.460524
  • Long. (^o): 150.168149
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009968	Metagenome / Metatranscriptome	310	Y
F017885	Metagenome / Metatranscriptome	238	Y
F018746	Metagenome / Metatranscriptome	233	Y
F030944	Metagenome / Metatranscriptome	184	Y
F058559	Metagenome / Metatranscriptome	135	Y
F059998	Metagenome / Metatranscriptome	133	Y
F072352	Metagenome / Metatranscriptome	121	Y
F074913	Metagenome / Metatranscriptome	119	Y
F084407	Metagenome / Metatranscriptome	112	N
F088944	Metagenome / Metatranscriptome	109	N
F090615	Metagenome / Metatranscriptome	108	N
F095523	Metagenome / Metatranscriptome	105	N
F095525	Metagenome / Metatranscriptome	105	Y
F101222	Metagenome / Metatranscriptome	102	N
F103315	Metagenome / Metatranscriptome	101	N
F104681	Metagenome / Metatranscriptome	100	Y
F105113	Metagenome / Metatranscriptome	100	N
F105249	Metagenome / Metatranscriptome	100	N
F105253	Metagenome / Metatranscriptome	100	N
F105255	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LSCMMerge_1000013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	317015
LSCMMerge_1000136	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	81865
LSCMMerge_1000585	All Organisms → cellular organisms → Bacteria	20755
LSCMMerge_1002428	All Organisms → cellular organisms → Bacteria	7102
LSCMMerge_1009643	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	2393
LSCMMerge_1009985	All Organisms → cellular organisms → Bacteria	2324
LSCMMerge_1011210	Not Available	2113
LSCMMerge_1011251	Not Available	2106
LSCMMerge_1016592	Not Available	1526
LSCMMerge_1020451	Not Available	1286
LSCMMerge_1022745	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter jiangxiensis	1174
LSCMMerge_1025619	Not Available	1064
LSCMMerge_1026395	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1038
LSCMMerge_1027660	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1001
LSCMMerge_1028550	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	973
LSCMMerge_1029394	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	951
LSCMMerge_1031171	Not Available	908
LSCMMerge_1036732	Not Available	795
LSCMMerge_1045147	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	672

Sequences

Scaffold ID	Protein ID	Family	Sequence
LSCMMerge_1000013	LSCMMerge_100001332	F017885	MVDVEACRIAFQCPQCGRELEQTIGKLKSQARMICPGCSIGINIDATRLSNVVEEIRHAVEKVPPEITIKFYR*
LSCMMerge_1000136	LSCMMerge_100013652	F088944	MKNEDLEKGLFEIYLDSLEDRFDFNEDKEKIESLITEAGEASIIVEKKNIIEPIETQVLGTIRQLSHSGKLINYTPLELKENGLFLAMKASSFVRYALNKDIIAPGYSGEYLIDPYNNFLLYPEEIEDSVVLDYLDTVSVLALQEAFDNIKKEEQIRKGIDFSAIQDKWKLEFRFKEYQLTSHFRFRNVDENAIDLTPMVDLLMKKEELSISKYAAARPTLTEAFDLMRQPKSSNIFYALTHTLVKESDGRVFLYPDEDYIDKAGRIYICTECVFEGYIPRRLRLGVIGFRDLKSIQELLNIRIEMEEEEKK*
LSCMMerge_1000170	LSCMMerge_10001703	F105253	MKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKAYLIQAMQENE*
LSCMMerge_1000585	LSCMMerge_100058522	F104681	MQMKTLNLIIKELKDVCNQYPIMQERISALKEAGYDNINYVYVKRNMGLFTALHLPKKKLYRIQIGYTELQKGYPAAWCMDISSIDVVDKVELPF*
LSCMMerge_1002428	LSCMMerge_10024286	F105249	MKLTNTIKHLAVGCMAGAAILIGNWLIGLIFSDYSGGLAGFAAVAFGFATILWERSQFYKATEPKKLMTPAQYLKAKWLDTIVDLIAGNAPVWLILAAAGLV*
LSCMMerge_1009643	LSCMMerge_10096433	F101222	MNVWVAIAINIVVYLVSFAYAWGKLNTKISDIEKRYYELEGKMSDIMECSIQKEQYKSEQQNINRRIDEITSLNIDARLTKIETLLVTILGELKDGKYTK*
LSCMMerge_1009985	LSCMMerge_10099855	F072352	MNPPKTAFSDVKRAPTIYTLPECPNGCGEMLALDDGWQCPICYRYLGYRRGEQHP*
LSCMMerge_1011210	LSCMMerge_10112102	F105255	MENETFTKLVDKHASPLLIRKYTHWGFPIYVGMITDDDLTTLDNVVVAFMKANKTDGWVNDIQKLRNMAGALTEHLNDTFEKSEGVAVVFYVDKCFISSLHGDFMNHTACRIEFYGLLQMSTGV*
LSCMMerge_1011251	LSCMMerge_10112512	F090615	MRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGALLCPPPDPEGKSIPAKLFNEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKMANADRLRAARAKTGS*
LSCMMerge_1016592	LSCMMerge_10165922	F084407	MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFEGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDSDESP*
LSCMMerge_1020451	LSCMMerge_10204513	F103315	MITVEIYIFLAAVVAAAFIYIFLDLDNRLYGNLFAASFAGILSGLLALWSFNENTVYITTVPETAITVDHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEIMHESRMPDDEEAYE*
LSCMMerge_1022745	LSCMMerge_10227452	F074913	MCCWRRFGVARVFALVVRYRDMLLFVNSRVGKNRDTRRETPAVAGAGRGASHGAASLVTQLSRHGAPMTYTDLLAPVN
LSCMMerge_1025619	LSCMMerge_10256191	F030944	MNTTLEIPEGSKATIQGKVIDGKNYLVVEMEQEPELKEGDLAIFWDYTPREAIIAVYRGVEDGRYFDHLDFYWDNALKWDGTKEQYEKVLRGEL*
LSCMMerge_1026395	LSCMMerge_10263951	F095523	LYNPEGPLFVKARKKEIPILRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLASPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNAADLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINHLFQRIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISLAAG*
LSCMMerge_1027660	LSCMMerge_10276602	F018746	MRPTSETLNDFEAAVLAALEQTPEKTVLAADLVREFSTRVGRTSCIFRLERMERRGLVRTSRFAGRILIHPPVEE*
LSCMMerge_1028550	LSCMMerge_10285501	F059998	MTESEKLNQALIEDLAERELDKLNPTLSGQPLTEKAKKYFLSEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVPFSDVIREIAGEIFELPEKKTTVGVMTQDEYISAMR
LSCMMerge_1029394	LSCMMerge_10293942	F059998	MDDLEFIEDLALLELAKLNPTLSGQPLTEKAKKYFLSEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEIFELPEKKTTVGVMTQDEYISAMR
LSCMMerge_1031171	LSCMMerge_10311713	F058559	MKEFMYYVNGLYFANLKTARKHAQRVGDSDILLTLGDYDETILAYHPMSERLERIQSVNEAKEKLLREYESKRFIK*
LSCMMerge_1034057	LSCMMerge_10340571	F105113	VEILQKSMPVWKMKYIAAVFASLLFCLIICSLPSHAVISSTMYSNGGSIIVNTDESWETSNNLMRFGTVNDSYLYNGKSQTIVSLGRTGVMKQDSTKVETLGMLNAFDSAGMFSTQTNIPESMCDSTNFLAGYGNQSTSRYPETQTVEGLWGLMGSGPGTTYESQVEVNDKVVGVSVQGTTPQGYLYE
LSCMMerge_1036732	LSCMMerge_10367321	F009968	VRPSTCTGCRSHYRERHWWIFEIDFCGLDGCAVGFECPLGCLDTPGCLAYERAFAWPEGAIA*
LSCMMerge_1045147	LSCMMerge_10451472	F095525	MKPVTAIWLVALGLVVGVVIGQLLQYNKHRIENFINKLKKK*