NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095525

Metagenome / Metatranscriptome Family F095525

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095525
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 41 residues
Representative Sequence MKALTDIGLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK
Number of Associated Samples 79
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 28.57 %
% of genes near scaffold ends (potentially truncated) 22.86 %
% of genes from short scaffolds (< 2000 bps) 92.38 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.524 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge
(59.048 % of family members)
Environment Ontology (ENVO) Unclassified
(95.238 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(69.524 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 0.00%    Coil/Unstructured: 43.48%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07282OrfB_Zn_ribbon 3.81
PF00078RVT_1 0.95
PF00535Glycos_transf_2 0.95



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.52 %
All OrganismsrootAll Organisms30.48 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2027040000|ADn_FTWC1V109FTDY3Not Available502Open in IMG/M
2027040000|ADn_FUOFX6F01BI2AINot Available548Open in IMG/M
2027040000|ADn_FUOFX6F02I19LZNot Available532Open in IMG/M
2070309008|AD_consensus_for_cluster_2838Not Available557Open in IMG/M
2070309008|AD_consensus_for_cluster_29424All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales515Open in IMG/M
2070309008|AD_singleton_cluster_2180Not Available559Open in IMG/M
3300002168|JGI24712J26585_10064796Not Available1433Open in IMG/M
3300002378|JGI24502J29692_10065362Not Available1431Open in IMG/M
3300002837|bg3kmer60_1075310Not Available692Open in IMG/M
3300002898|draft_10180659Not Available1254Open in IMG/M
3300003660|LSCMMerge_1045147All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales672Open in IMG/M
3300006381|Ga0079102_1334306All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales570Open in IMG/M
3300006598|Ga0079098_1399675All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales877Open in IMG/M
3300009542|Ga0116234_1133551Not Available707Open in IMG/M
3300009588|Ga0116232_1186097Not Available510Open in IMG/M
3300009589|Ga0116233_1260464All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales852Open in IMG/M
3300009670|Ga0116183_1102384Not Available1510Open in IMG/M
3300009670|Ga0116183_1140465All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1201Open in IMG/M
3300009671|Ga0123334_1252353Not Available783Open in IMG/M
3300009673|Ga0116185_1035301All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2841Open in IMG/M
3300009675|Ga0116149_1379706All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Galbibacter → Galbibacter marinus592Open in IMG/M
3300009676|Ga0116187_1079085All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1391701Open in IMG/M
3300009680|Ga0123335_1308683Not Available759Open in IMG/M
3300009680|Ga0123335_1426145Not Available607Open in IMG/M
3300009681|Ga0116174_10271433Not Available825Open in IMG/M
3300009681|Ga0116174_10455768Not Available587Open in IMG/M
3300009681|Ga0116174_10584559Not Available502Open in IMG/M
3300009685|Ga0116142_10199875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetota incertae sedis → Candidatus Hakubanella → Candidatus Hakubanella thermoalkaliphilus1022Open in IMG/M
3300009685|Ga0116142_10340773Not Available732Open in IMG/M
3300009688|Ga0116176_10564616All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales551Open in IMG/M
3300009692|Ga0116171_10112310Not Available1626Open in IMG/M
3300009692|Ga0116171_10265022All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales947Open in IMG/M
3300009693|Ga0116141_10308336All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales834Open in IMG/M
3300009694|Ga0116170_10468857Not Available679Open in IMG/M
3300009715|Ga0116160_1235103Not Available704Open in IMG/M
3300009720|Ga0116159_1273330All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139660Open in IMG/M
3300009767|Ga0116161_1194228Not Available875Open in IMG/M
3300009767|Ga0116161_1240002Not Available755Open in IMG/M
3300009772|Ga0116162_10240567Not Available762Open in IMG/M
3300009779|Ga0116152_10542260Not Available529Open in IMG/M
3300009781|Ga0116178_10488172Not Available598Open in IMG/M
3300009782|Ga0116157_10357637Not Available763Open in IMG/M
3300010310|Ga0116235_1307109All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales627Open in IMG/M
3300010344|Ga0116243_10028896All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales5474Open in IMG/M
3300010345|Ga0116253_10180001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1415Open in IMG/M
3300010346|Ga0116239_10080813All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2790Open in IMG/M
3300010346|Ga0116239_10295122All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1140Open in IMG/M
3300010346|Ga0116239_10416019Not Available909Open in IMG/M
3300010349|Ga0116240_10024465Not Available5894Open in IMG/M
3300010349|Ga0116240_10649457Not Available689Open in IMG/M
3300010349|Ga0116240_10655873Not Available685Open in IMG/M
3300010350|Ga0116244_10423088Not Available887Open in IMG/M
3300010351|Ga0116248_10234580Not Available1470Open in IMG/M
3300010351|Ga0116248_10828565Not Available642Open in IMG/M
3300010351|Ga0116248_11060728Not Available546Open in IMG/M
3300010356|Ga0116237_10022070All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales8502Open in IMG/M
3300012956|Ga0154020_10424202Not Available1133Open in IMG/M
3300014203|Ga0172378_11330512Not Available505Open in IMG/M
3300014204|Ga0172381_11280428Not Available532Open in IMG/M
3300014204|Ga0172381_11396523Not Available505Open in IMG/M
3300014205|Ga0172380_10945719Not Available612Open in IMG/M
3300014205|Ga0172380_10983779Not Available598Open in IMG/M
3300014206|Ga0172377_10674956Not Available823Open in IMG/M
3300015214|Ga0172382_11109972Not Available518Open in IMG/M
3300019217|Ga0179946_1174516Not Available725Open in IMG/M
3300019219|Ga0179942_1213486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales633Open in IMG/M
3300019220|Ga0179936_1035510Not Available1266Open in IMG/M
3300019224|Ga0180029_1013891All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1391864Open in IMG/M
3300019224|Ga0180029_1045828Not Available673Open in IMG/M
3300019226|Ga0179934_1106825All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella868Open in IMG/M
3300019226|Ga0179934_1152255Not Available554Open in IMG/M
3300019231|Ga0179935_1278028Not Available844Open in IMG/M
3300019237|Ga0180028_1366361Not Available591Open in IMG/M
3300019239|Ga0180030_1062303Not Available1412Open in IMG/M
3300019239|Ga0180030_1154206Not Available629Open in IMG/M
3300025611|Ga0209408_1079587Not Available893Open in IMG/M
3300025677|Ga0209719_1042190All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1391721Open in IMG/M
3300025702|Ga0209203_1154700Not Available716Open in IMG/M
3300025708|Ga0209201_1105825Not Available1002Open in IMG/M
3300025724|Ga0208196_1157221Not Available742Open in IMG/M
3300025737|Ga0208694_1220037Not Available598Open in IMG/M
3300025740|Ga0208940_1249037Not Available552Open in IMG/M
3300025748|Ga0208459_1177048All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales743Open in IMG/M
3300025762|Ga0208040_1231607Not Available627Open in IMG/M
3300025847|Ga0209607_1086042Not Available1403Open in IMG/M
3300025856|Ga0209604_1376434Not Available503Open in IMG/M
3300025858|Ga0209099_1077322All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1391521Open in IMG/M
3300025858|Ga0209099_1178437Not Available837Open in IMG/M
3300025859|Ga0209096_1065186Not Available1589Open in IMG/M
3300025866|Ga0208822_1202790Not Available713Open in IMG/M
3300025867|Ga0209098_1233516Not Available738Open in IMG/M
3300025877|Ga0208460_10168580Not Available862Open in IMG/M
3300025882|Ga0209097_10266724Not Available693Open in IMG/M
3300026290|Ga0209510_1258631Not Available520Open in IMG/M
3300026311|Ga0209723_1025179All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3557Open in IMG/M
(restricted) 3300028564|Ga0255344_1039839All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2636Open in IMG/M
(restricted) 3300028564|Ga0255344_1150882Not Available959Open in IMG/M
(restricted) 3300028570|Ga0255341_1299794All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales591Open in IMG/M
3300028602|Ga0265294_10482849Not Available758Open in IMG/M
3300028602|Ga0265294_10552758Not Available687Open in IMG/M
3300028602|Ga0265294_10605830All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales643Open in IMG/M
3300028603|Ga0265293_10544446Not Available657Open in IMG/M
(restricted) 3300028677|Ga0255346_1067433All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1787Open in IMG/M
3300029288|Ga0265297_10882893Not Available540Open in IMG/M
3300033166|Ga0334900_1005725All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1397806Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge59.05%
Anaerobic Biogas ReactorEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor13.33%
Landfill LeachateEngineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate7.62%
WastewaterEngineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Unclassified → Wastewater5.71%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater3.81%
WastewaterEngineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater3.81%
Biogas FermentantionEngineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion1.90%
Coalbed WaterEnvironmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water0.95%
Active SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge0.95%
Biogas FermenterEngineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter0.95%
SludgeEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge0.95%
Biogas ReactorEngineered → Biotransformation → Unclassified → Unclassified → Unclassified → Biogas Reactor0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2027040000Wastewater viral communities from wastewater treatment facility in Singapore - AD-no assemblyEngineeredOpen in IMG/M
2070309008Wastewater viral communities from wastewater treatment facility in Singapore - AD-deduplicated dataEngineeredOpen in IMG/M
3300002168Biogas fermentation microbial communities from Germany - Plant 3 DNA2EngineeredOpen in IMG/M
3300002378Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300002837Biogas reactor microbial communities from SLU, Sweden, that are enriched on cellulose - Sample No3 60kmerEngineeredOpen in IMG/M
3300002898Metagenome Biopara biogasfermenter May 2013 pooledEngineeredOpen in IMG/M
3300003660Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged)EnvironmentalOpen in IMG/M
3300006381Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Total_1113_SludgeMetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300006598Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_01_SludgeMetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300009542Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A SIP RNA (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300009588Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A SIP RNA (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300009589Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B SIP RNA (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300009670Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaGEngineeredOpen in IMG/M
3300009671Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNAEngineeredOpen in IMG/M
3300009673Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaGEngineeredOpen in IMG/M
3300009675Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaGEngineeredOpen in IMG/M
3300009676Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaGEngineeredOpen in IMG/M
3300009680Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNAEngineeredOpen in IMG/M
3300009681Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaGEngineeredOpen in IMG/M
3300009685Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaGEngineeredOpen in IMG/M
3300009688Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaGEngineeredOpen in IMG/M
3300009692Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaGEngineeredOpen in IMG/M
3300009693Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaGEngineeredOpen in IMG/M
3300009694Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaGEngineeredOpen in IMG/M
3300009715Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaGEngineeredOpen in IMG/M
3300009720Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaGEngineeredOpen in IMG/M
3300009767Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS3_MetaGEngineeredOpen in IMG/M
3300009772Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaGEngineeredOpen in IMG/M
3300009779Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC119_MetaGEngineeredOpen in IMG/M
3300009781Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC12_MetaGEngineeredOpen in IMG/M
3300009782Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaGEngineeredOpen in IMG/M
3300010310Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B SIP RNA (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300010344AD_JPAScaEngineeredOpen in IMG/M
3300010345AD_JPNAca2EngineeredOpen in IMG/M
3300010346AD_USMOcaEngineeredOpen in IMG/M
3300010349AD_HKTAcaEngineeredOpen in IMG/M
3300010350AD_HKSTcaEngineeredOpen in IMG/M
3300010351AD_USPNcaEngineeredOpen in IMG/M
3300010356AD_USDEcaEngineeredOpen in IMG/M
3300012956Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MGEngineeredOpen in IMG/M
3300014203Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaGEnvironmentalOpen in IMG/M
3300014204Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaGEngineeredOpen in IMG/M
3300014205Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaGEngineeredOpen in IMG/M
3300014206Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaGEngineeredOpen in IMG/M
3300015214Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaGEngineeredOpen in IMG/M
3300019217Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNNA4_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019219Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC052_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019220Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC059_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019224Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-B RNA time zero (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019226Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC055_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019231Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC057_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019237Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-A RNA time zero (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019239Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-A RNA time zero (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300025611Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025677Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025702Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC109_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025708Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025724Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025737Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025740Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025748Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025762Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025847Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC117_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025856Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025858Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025859Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC034_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025866Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025867Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025877Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025882Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG (SPAdes)EngineeredOpen in IMG/M
3300026290Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes)EngineeredOpen in IMG/M
3300026311Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)EngineeredOpen in IMG/M
3300028564 (restricted)Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant18EngineeredOpen in IMG/M
3300028570 (restricted)Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant12EngineeredOpen in IMG/M
3300028602Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3EnvironmentalOpen in IMG/M
3300028603Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138REngineeredOpen in IMG/M
3300028677 (restricted)Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant22EngineeredOpen in IMG/M
3300029288Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91EngineeredOpen in IMG/M
3300033166Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R3EngineeredOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
AD_na_33820802027040000WastewaterMKTLTDIGLVALGLVVGVVVGQLLQYNKHRIENFYKQVKKEIR
AD_na_63860202027040000WastewaterMKALTDIGLVALGLVVGVVVGQLLQYNKHRIENFINRLKKK
AD_na_29796802027040000WastewaterMKALTDIGLVALGLVAGVVVGQLLQYNKHRIEDFINKLKKK
AD_010298702070309008WastewaterMKALTDIGLVALGLVVGVVVGQLLQYNKHRIENFINKLKKK
AD_010661102070309008WastewaterMKAFTDIGLVALGLVVGVVVGQLLQYNKHRIENFINRXKKKXXXXX
AD_024572002070309008WastewaterMKPVTAIWLVALGLVAGVVVGQLLQYNQINIQNIIKKIFGK
JGI24712J26585_1006479623300002168Biogas FermentantionMKALTDIGLVALGLVAGVVVGQLLQYHQKRIENFINKLKKK*
JGI24502J29692_1006536223300002378Biogas FermentantionMKELTDIALVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
bg3kmer60_107531033300002837Biogas ReactorNVTAIWLVALGLVVGVVVGQLLQYNKHRIENFINKLKKKIK*
draft_1018065933300002898Biogas FermenterMKAFTDIGLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
LSCMMerge_104514723300003660Coalbed WaterMKPVTAIWLVALGLVVGVVIGQLLQYNKHRIENFINKLKKK*
Ga0079102_133430623300006381Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYNQKRIEEFINKSPGG
Ga0079098_139967523300006598Anaerobic Digestor SludgeMKALTDIGLVALGLVVGIVIGQCLQYHQKRIEEFVNKIFKKK*
Ga0116234_113355113300009542Anaerobic Biogas ReactorMKPVTAIWLVALGLVVGVVIGQLLQYHQINLLETIKKIFKR
Ga0116232_118609713300009588Anaerobic Biogas ReactorMKHLTDIGLVALGLVVGVVLGQLLHYHQINLLETIKNIFKR*
Ga0116233_126046423300009589Anaerobic Biogas ReactorMKELTDIGLVAFGVVVGVVLGQLLQYNKHRIENFINKLKKK*
Ga0116183_110238413300009670Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKKKI*
Ga0116183_114046533300009670Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNKQRIENFINKLKKKNNE*
Ga0123334_125235333300009671Anaerobic Biogas ReactorMKTLTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR*
Ga0116185_103530153300009673Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGVVVGQLLQYHQINIQNIIKKIFGK*
Ga0116149_137970613300009675Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYNKQRIENFINKLKKKIK*
Ga0116187_107908523300009676Anaerobic Digestor SludgeMKTLTDIALVALGLVAGVVIGQLLQYHQINIQNIIKKIFGK*
Ga0123335_130868343300009680Anaerobic Biogas ReactorRAMKALTDIGLVALGLVVGIPVGACLQYNKQRIEEFINKLKKK*
Ga0123335_142614523300009680Anaerobic Biogas ReactorMKHLTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR*
Ga0116174_1027143323300009681Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVVGQLLQYHQKRIEEFVNKIFKKKIK*
Ga0116174_1045576833300009681Anaerobic Digestor SludgeGLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKKKI*
Ga0116174_1058455913300009681Anaerobic Digestor SludgeLSAYFKAMKALTDIALVALGLVVGVVVGQLLQYNKHRIENFINKLKKK*
Ga0116142_1019987523300009685Anaerobic Digestor SludgeLVALGLVVGVVIGQLLQYNKHRIENFINKLKKKIK*
Ga0116142_1034077313300009685Anaerobic Digestor SludgeTDIGLVALGLVVGVVIGQLLQYNKHRIENFINKLKKKIK*
Ga0116176_1056461613300009688Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNKKRVENFINKLKKK
Ga0116171_1011231043300009692Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGVVLGQLLQYHQINIQNIIKKIFKKK*
Ga0116171_1026502223300009692Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK*
Ga0116141_1030833623300009693Anaerobic Digestor SludgeMKALTDIGLVALGLVVGIVIGQCLQYHQINILEIIKKLFTK*
Ga0116170_1046885733300009694Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGVVVGQLLQYHKRSIENFI
Ga0116160_123510333300009715Anaerobic Digestor SludgeGRMKALTDIALVALGLVVGVVVGQLLQYHQINIQNIIKKIFKKK*
Ga0116159_127333033300009720Anaerobic Digestor SludgeGLVALGLVAGVVIGQLLQYNQINIQNIIKKIFKKK*
Ga0116161_119422843300009767Anaerobic Digestor SludgeMKELTDIGLVALGLVVGVVVGQLLQYNQINIQNIIKKIFKKK*
Ga0116161_124000213300009767Anaerobic Digestor SludgeMKTLTDIALVALGLVAGVVIGQLLQYNQINIQNIIKKIFGK*
Ga0116162_1024056723300009772Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGVVVGQLLQYNKHRIEDFINKLKKK*
Ga0116152_1054226023300009779Anaerobic Digestor SludgeMKHLTDIGLVALGLVAGVVVGQLLQYHQKRIEEFINKIFKKK*
Ga0116178_1048817213300009781Anaerobic Digestor SludgeMKHLTDIGLVALGLVVGIVIGQCLQYNKKRIENFINKLKKK*
Ga0116157_1035763723300009782Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVVGQLLQYNKHRIENFINKLKKK*
Ga0116235_130710923300010310Anaerobic Biogas ReactorMKPVTAIWLVALGLVVGIVIGQCLQYNKKRIENFTNKLKKK*
Ga0116243_1002889633300010344Anaerobic Digestor SludgeMKTLTDIGLVALGLVAGVVIGQLLQYNQINIQNIIKKIFGK*
Ga0116253_1018000133300010345Anaerobic Digestor SludgeMKTLTAFMWVALGLVVGVVVGQLLQYHQINIQNIIKKIFGK*
Ga0116239_1008081333300010346Anaerobic Digestor SludgeMKELTDIGLVALGLVVGIVIGQCLQYNKQRIDNFINKLKKK*
Ga0116239_1029512223300010346Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNQKRIEEFVNKIFKKKIK*
Ga0116239_1041601923300010346Anaerobic Digestor SludgeAYFKAMKPVTVIWLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
Ga0116240_1002446543300010349Anaerobic Digestor SludgeMRALTDIGLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
Ga0116240_1064945733300010349Anaerobic Digestor SludgePVTAIWLVALGLVVGVVVGQLLQYHQINIMEIIKKIFKK*
Ga0116240_1065587333300010349Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
Ga0116244_1042308843300010350Anaerobic Digestor SludgeMKALTDIGLVAFGLVVGVVVGQLLQYHQINIMEIIKKIFKK*
Ga0116248_1023458033300010351Anaerobic Digestor SludgeMKPVTAIWLVALGLVAGVVIGQCLQYNKQRIENFINKLKKK*
Ga0116248_1082856513300010351Anaerobic Digestor SludgeVALGLVVGIVIGQCLQYNKQRIENFINKLKKKNNE*
Ga0116248_1106072833300010351Anaerobic Digestor SludgePVTAIWLVALGLVVGVVVGQLLQYHQKRIEEFVNKIFKKKIK*
Ga0116237_1002207023300010356Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYNKHRIENFINKLKKKIK*
Ga0154020_1042420243300012956Active SludgeMKAFTDIGLVALGLVVGVVLGQLLQYHQKRIEEFINKIFKKK*
Ga0172378_1133051223300014203GroundwaterMKALTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR*
Ga0172381_1128042813300014204Landfill LeachateMKAFTDIALVALGLVAGVVVGKLLQYNKKRIENFINKLKKK*
Ga0172381_1139652323300014204Landfill LeachateTAIWLVALGLVAGVVIGQLLQYHQINLLETIKKIFKR*
Ga0172380_1094571933300014205Landfill LeachateMKHLTDIGLVALGLVVGVVIGQLLQYNKHRIENFINKL
Ga0172380_1098377923300014205Landfill LeachateMKPVTAIWLVALGLVAGVVVGQLLQYNKKRIENFINKLKKK*
Ga0172377_1067495623300014206Landfill LeachateMKALTDIGLVALGLVVGIVIGQCLQYNKKRIENFINKLKKK*
Ga0172382_1110997223300015214Landfill LeachateMKALTDIGLVALGLVVGVVIGQLLQYHQKRIEEFVNKIFKKKIR*
Ga0179946_117451633300019217Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGVVVGQLLQYHQINIQNIIKKIFGK
Ga0179942_121348623300019219Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKR
Ga0179936_103551023300019220Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNKKRIENFINKLKKK
Ga0180029_101389123300019224Anaerobic Biogas ReactorMKPVTAIWLVALGLVAGVVVGQLLQYHQINLLETIKKIFKR
Ga0180029_104582823300019224Anaerobic Biogas ReactorMKTLTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKNIFKR
Ga0179934_110682523300019226Anaerobic Digestor SludgeMKALTDIGLVAFGLVVGVVVGQLLQYNKHRIENFINKLKKKYYERI
Ga0179934_115225513300019226Anaerobic Digestor SludgeMKELTDIGLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK
Ga0179935_127802813300019231Anaerobic Digestor SludgeMKHLTDIGLVALGLVVGIVIGQCLQYNKQRIDNFINKLKKK
Ga0180028_136636123300019237Anaerobic Biogas ReactorMKHLTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR
Ga0180030_106230353300019239Anaerobic Biogas ReactorMKELTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR
Ga0180030_115420623300019239Anaerobic Biogas ReactorMKALTDIGLVALGLVVGVVVGQLLHHFKPFLDKIFKNKHLTKI
Ga0209408_107958743300025611Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVVGQLLQYHQINIMEIIKKIFKK
Ga0209719_104219063300025677Anaerobic Digestor SludgeMKTLTDIGLVALGLVAGVVIGQLLQYNQINIQNIIKKIFGK
Ga0209203_115470013300025702Anaerobic Digestor SludgeCFKTMRALTDIGLVALGLVVGVVIGQLLHYHQINLLETIKKIFKR
Ga0209201_110582523300025708Anaerobic Digestor SludgeMKELTDIGLVALGLVVGIVIGQCLQYNKQRIDNFINKLKKK
Ga0208196_115722133300025724Anaerobic Digestor SludgeMKELTDIALVALGLVAGVVIGQLLQYHQINIQNIIKKIFGK
Ga0208694_122003723300025737Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKKKI
Ga0208940_124903723300025740Anaerobic Digestor SludgeMKTLTAFMWVALGLVVGVVVGQLLQYHQINIQNIIKKIFGK
Ga0208459_117704823300025748Anaerobic Digestor SludgeMKPVTAIWLVALGLVAGVVIGQCLQYNKQRIENFINKLKKK
Ga0208040_123160713300025762Anaerobic Digestor SludgeDIALVALGLVVGIPVGACLQYNKHRIENFINKLKKK
Ga0209607_108604243300025847Anaerobic Digestor SludgeMKELTDIALVALGLVVGVVVGQLLQYHQINIMEIIKKIFKK
Ga0209604_137643423300025856Anaerobic Digestor SludgeMKALTDIGLVALGLVVGIVIGQCLQYHQINILEIIKKLFTK
Ga0209099_107732213300025858Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK
Ga0209099_117843713300025858Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGVVLGQLLQYHQINIQNIIKKIFKKK
Ga0209096_106518613300025859Anaerobic Digestor SludgeMKALTDIGLVALGLVVGVVIGQLLQYNKHRIENFINKLKKKIK
Ga0208822_120279033300025866Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGIVIGQCLQYHQKRIEEFVNKIFKKK
Ga0209098_123351623300025867Anaerobic Digestor SludgeMKTLTDIGLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK
Ga0208460_1016858023300025877Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGVVVGQLLQYNQKRIEEFINKIFKKKI
Ga0209097_1026672433300025882Anaerobic Digestor SludgeMKPVTAIWLVALGLVVGVVVGQLLQYNKKRIENFINKLKKK
Ga0209510_125863113300026290Anaerobic Biogas ReactorKTMKHLTDIGLVAFGLVVGVVLGQLLHYHQINLLETIKKIFKR
Ga0209723_102517963300026311Anaerobic Biogas ReactorMKALTDIGLVALGLVVGIVIGQCLQYNKQRIENFINKLKKK
(restricted) Ga0255344_103983923300028564WastewaterMKPVTAIWLVALGLVVGIVIGQLLQYNKQRIENFINKLKKK
(restricted) Ga0255344_115088213300028564WastewaterMKALTDIGLVAFGLVVGVVLGQLLQYNRHRIENFINKLKKKNNE
(restricted) Ga0255341_129979423300028570WastewaterMKSVTAIWLVALGLVVGVVVGQLLQYNKHRIENFINKLKKKNNE
Ga0265294_1048284913300028602GroundwaterMKALTDIGLVALGLVVGIVIGQCLQYNKKRIENFINKLKKK
Ga0265294_1055275833300028602GroundwaterMKPVTAIWLVALGLVAGVVIGQLLQYHQINLLETIKNIFKR
Ga0265294_1060583023300028602GroundwaterMKHLTDIGLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKKKI
Ga0265293_1054444633300028603Landfill LeachateLVALGLVVGVVIGQLLQYHQKRIEEFINKIFKKKI
(restricted) Ga0255346_106743343300028677WastewaterMKPVTAIWLVALGLVVGVVVGQLLQYNKQRIENFINKLKKK
Ga0265297_1088289323300029288Landfill LeachateMKHLTDIGLVALGLVVGVVVGQLLQYHQKRIEEFINKIFKKKI
Ga0334900_100572513300033166SludgeMKELTDIGLVAFGLVVGVVLGQLLHYHQINLLETIK


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