3300003654: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter

Overview

Basic Information

• IMG/M Taxon OID: 3300003654
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0112339 | Gp0107769 | Ga0062110
• Sample Name: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28501416
• Sequencing Scaffolds: 42
• Novel Protein Genes: 45
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niabella → Niabella drilacis	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → subglacial lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: West Antarctica
• Coordinates
  • Lat. (^o): -84.24
  • Long. (^o): -153.694
  • Alt. (m): N/A
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000625	Metagenome / Metatranscriptome	977	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004408	Metagenome / Metatranscriptome	439	Y
F004727	Metagenome / Metatranscriptome	426	Y
F006895	Metagenome / Metatranscriptome	362	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007263	Metagenome / Metatranscriptome	354	Y
F007364	Metagenome / Metatranscriptome	352	Y
F007365	Metagenome / Metatranscriptome	352	Y
F008304	Metagenome / Metatranscriptome	335	Y
F009327	Metagenome / Metatranscriptome	319	Y
F010028	Metagenome / Metatranscriptome	309	Y
F011563	Metagenome / Metatranscriptome	289	Y
F014140	Metagenome / Metatranscriptome	265	Y
F016970	Metagenome / Metatranscriptome	243	Y
F021769	Metagenome / Metatranscriptome	217	Y
F023107	Metagenome / Metatranscriptome	211	Y
F023851	Metagenome / Metatranscriptome	208	Y
F023957	Metagenome / Metatranscriptome	208	Y
F026883	Metagenome / Metatranscriptome	196	Y
F036123	Metagenome / Metatranscriptome	170	Y
F037095	Metagenome / Metatranscriptome	168	Y
F043392	Metagenome / Metatranscriptome	156	N
F045131	Metagenome / Metatranscriptome	153	Y
F045788	Metagenome / Metatranscriptome	152	Y
F046392	Metagenome / Metatranscriptome	151	Y
F049700	Metagenome / Metatranscriptome	146	Y
F051089	Metagenome / Metatranscriptome	144	Y
F056888	Metagenome / Metatranscriptome	137	N
F063593	Metagenome	129	Y
F070993	Metagenome / Metatranscriptome	122	Y
F076008	Metagenome	118	Y
F079981	Metagenome / Metatranscriptome	115	Y
F085603	Metagenome / Metatranscriptome	111	N
F087244	Metagenome / Metatranscriptome	110	Y
F100371	Metagenome	102	Y
F101030	Metagenome / Metatranscriptome	102	N
F105151	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SLW08_100337	Not Available	11451
SLW08_100509	Not Available	6359
SLW08_100629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	4882
SLW08_100990	All Organisms → cellular organisms → Bacteria → Proteobacteria	4496
SLW08_101297	All Organisms → cellular organisms → Bacteria	3299
SLW08_101327	Not Available	3249
SLW08_101524	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2958
SLW08_102855	All Organisms → Viruses → Predicted Viral	1921
SLW08_102867	Not Available	1917
SLW08_102936	All Organisms → Viruses → Predicted Viral	1886
SLW08_103275	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1760
SLW08_103468	Not Available	1688
SLW08_103642	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1627
SLW08_103722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1603
SLW08_103863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Niabella → Niabella drilacis	1566
SLW08_104695	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1375
SLW08_104814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1351
SLW08_105511	All Organisms → Viruses → Predicted Viral	1708
SLW08_105983	Not Available	1161
SLW08_106631	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1085
SLW08_107247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1023
SLW08_107667	All Organisms → Viruses → Predicted Viral	1816
SLW08_108309	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	929
SLW08_108819	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	896
SLW08_109052	Not Available	881
SLW08_109217	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	871
SLW08_109392	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	861
SLW08_110555	Not Available	799
SLW08_110590	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	797
SLW08_110992	All Organisms → cellular organisms → Bacteria	778
SLW08_111128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	773
SLW08_111405	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	762
SLW08_111457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	760
SLW08_112542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	716
SLW08_113623	Not Available	676
SLW08_113856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	667
SLW08_113955	Not Available	664
SLW08_114000	Not Available	662
SLW08_114115	Not Available	659
SLW08_114415	Not Available	649
SLW08_114419	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	649
SLW08_115636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
SLW08_100337	SLW08_1003372	F023957	MSKTPYEIRLELLQEARAILQARASKPEYMPTTEDIIAEADKLNAFISSKTTQR*
SLW08_100509	SLW08_1005097	F007364	MRQRENNMGYSTFTEDQITEFIEMAQEMGIGPSMRALGYPKSYHTARKWHEQRHVAMPTSNTLAQMSKQLDIFYGDKEKVLAAQAVIDRTVEALYQDDLTSDDINKLSNALDLAIMDILNEAKMRSSSIKESLRVVQN*
SLW08_100629	SLW08_10062910	F000473	MENIKMTNNDHFKYGVNEWTGEPNKPVFYSNEMSKRVRDIKRPVHNLQMDIVQYPEFLAIRLYEDNFIQFDGIKKEMVIDYVSKVKRLIESYGVRCEMEGRPSERILRSN*
SLW08_100990	SLW08_1009905	F000376	MSTYQEKAKECKCCGKHIPLPTVLKEYNGIVVCPTTFSNIAEYKRLWVSFGSRPAGNIRKHFSDYVQQIVEKSTGEQNE*
SLW08_101297	SLW08_1012973	F037095	MAKLDLNRDGKVTMVEEILAAVGTYARAFLAAVTALFMYAEANNLNMDLGDLLLGGLAAIAPVILKALSPTNKEYGFKSKK*
SLW08_101327	SLW08_1013272	F004727	MKVNISYHDNESLTVEEIVKYAVSNYGKAARVEITPESGLAYDYIYHGLRQLITQEQVSLFYDTDSYQIDIKKLRADVLYKVTEILDSVIIDNEGRLTGI*
SLW08_101524	SLW08_1015241	F007365	MNYSMKEMAIRDYISSVDFKSNDWSHNKICEDMKVFLGEIPSFECFYKKDVMVNEVSGESKEFVTVDKIQIVFTDLDSKFKKLEFIIGDKI*
SLW08_102855	SLW08_1028556	F063593	MAHGLEITRDGKAKMAYSNRETPWHRLGVSMVGLQTAEAMLSAANADFDVVLTRVASVDADGAFILNPDGSPVLIDDSRATVRVNPDGTFDGLATVGTRFAIVQNKECLDYALAVVGASKGDAVVD
SLW08_102867	SLW08_1028672	F000376	MSYQEKAKECKCCGKHIPLPTVLKEYNGICVCPTTFSNIAEYKRLWLSFGSRPAGNVRKHFSDYVQQIVEQSIGE*
SLW08_102936	SLW08_1029361	F070993	VGAIEGVAVAGDIFTAIASGGGEGLAYQVGQCVLMNSHAPDPGFMSIRFTYDEGLNEFASYISNKWIRDWNGMTYDSYVNDNAGLNIQSGENFYPVNFFTDEGTVTWSGANIINGVEAPNGSLFLAQVANSTEPPG*
SLW08_103275	SLW08_1032753	F007263	MLAQQIDSNEFYEIMDEQFYCCSQSQFIYYCKLHGEQMGCQFCEFNPYERCECE*
SLW08_103468	SLW08_1034683	F045131	GLYDSGYNGSMAGVLHVTCGHARIKQGTRIGQYLSFNAEALHSYDGDYGVGKAHDAKYV*
SLW08_103642	SLW08_1036425	F014140	MNTYIVKLNVSLEVMAFNEEDAKEYVSDIFSIDDEIKSVVIVKIHQK*
SLW08_103722	SLW08_1037221	F079981	MATALVALEGVLKTETGDPIPEGIKLYRILVEHYRIVITSDLSRKATEHWLRSNLIIGYADIYDDRYFYEGQELRLRQLDMALALGRVDLFIDVDSDYCAKALEKGISVVMFASPRFVRRTRMVRQWDHLKKEVENQRDALLTAHVNSMPPKEYE*
SLW08_103863	SLW08_1038633	F045788	MLVERNVESRNFPMDSLYKAGMENVKDNIEFYFDKPYTCESVIQELFIRGIIDYIDKNKFPYLEK*
SLW08_104695	SLW08_1046951	F009327	MRGTKVQGRFKIDFETKSMDEGMVDELRDPVGNEVDWWLWDNAALQADYETWVDPIYDVSNQTDGQGRRWNEPFKFPVMLAQHQRGSNTLNERGFYTVDTLRIVAAVADVNRLLPNIITAPTLHIKDRIVFQGAVFVPTLVNPRGLYSTRYSVVTITCNQVNSEELVNDPQFQSYAN*
SLW08_104814	SLW08_1048144	F023851	TCSTAKLEPRWVVILAGRTNGSDYVKEVILKKRYLGADITASELLV*
SLW08_105511	SLW08_1055112	F010028	VTIRKQWTGRAPELVVVDFLDLVDAGETVPDKANFLKGFGRRHDVPLMVLHQTSRTAGADGRKLTMSSGAYGGEQQATMVIGVRRKKYEIAAEIHELVEKLDRSHSERATERLELLRYEQKIHEHTLTINLLKNKRPAGQLVDDIDFELDMRTGKLTDLHGELPRTYRQETMNWQDVGEDF*
SLW08_105983	SLW08_1059832	F085603	MKVEIEFNTDNAAFEDSFLMEITRVLQSAKAAIKDSENTTMIRRMIRDSNGNRIGTVTIKHDMPYSGMTAAREI*
SLW08_105983	SLW08_1059833	F101030	MTLTQFQEAFTIAKSTKSLTDVDDSNLYGFGLDDFKPVHTTIDAVAKTIRWQALQFDGNWNAELLDEVAKCGRRNFIVLG*
SLW08_106234	SLW08_1062343	F011563	VSDVNADIRVDVSTTAAIAALKNLQRQLSNFHQSVAKNSVAAAAAQRGLQTNLMRSIADTGMFTARMGNIRTSTESFTHALENNKLSMGQYFKYAGASTKTFGRLFKTQFDTIGKVAEERVKKLQTQYIKMGRDSSGAMKAMAITPHTLNMKDLSTQTAIAAQKQALFNQLIK
SLW08_106631	SLW08_1066311	F036123	ENAMLVRMTRDNMRYDVKGHTFTKSHPFVGMSEEEAQSIFDTEEGFRLATPKEVQDFYH*
SLW08_107247	SLW08_1072472	F079981	EGVLKTETGDPIPDGIKLYRILAEQYRVVITSDLSKKATEHWLRTNLVIGFADIYDDRYFYEGQELRLRQLDVAMALGRVELFVDADADYCAKALEKGVTVIMFASPKFVRRSRMIKKWETLREEVEKQRDALLEAHVNSLPKKYE*
SLW08_107667	SLW08_1076672	F021769	MNACGEHAEKSIINSLNERLKPYTYDSGVKGLLESLNDDMLNHELLYELKSLYNVLNTKNQGELYRQPINVLLQTINLESDQDRMSKVLNELAIYDWVPEIKLFVYNLTKSPEQRTNLLSGGRGESVFTIVESVEDGHVALIRDSWFLLTENVIEKTLLETHVKNEEELRSLRMIESAMKYATISDDRVNFRISEYLTIGLSVGKKGVVFINDDELNEETTLESLFSSPIIPIVNKNFYPILLEVSQNMDKFVELDVVKKVNNLINPYLECFAFNYKNTTFLYRCDERYGNS
SLW08_108309	SLW08_1083092	F087244	GSPGGPGTSPEEVVYLNLFEITFVLPVLLQAQGRNTLLLLENAQSITMDLAPDIANTTEQRFKYTTRAFMGVPTATTAKFTIKFQVNVNNGGSVENWNTLRAWYDLVWNSQTGYMHYKSDIIGTIIVNQHDKKGFVLRRVTFQNCQLHTLTGTALDWAQSTIQDVDATFVADYWIDEYIDNNFAISPPLISGY*
SLW08_108819	SLW08_1088191	F026883	MMPLKHILKNKLLLQKHFHTQESAMDNWPYWMFEENISLVNEILEEEESNQKKQEGDNPMGNFDANSMMKNASNMTSNMKMPTF*
SLW08_109052	SLW08_1090522	F037095	MAKDINKDGKVTMLEEILAAAGTYARAFLSAAIALYMTGNTSPRDLLMGGFAAIAPVILKALSPNHKEYGFKSKK*
SLW08_109217	SLW08_1092172	F002501	MYCRKCNGRVFVDRVFSQKLHMELFCIMCGFRVMANKETSKFGKWLSQKEEANQKTYGISS*
SLW08_109392	SLW08_1093922	F006895	MIGDKFNFEDVFFRDLTVCVLDTFESRIRWVNRFTAGDVEVNVPFYYSLSGDERFLLDSFIDDIASNNRYVELNTDIIPRGHLTLMGFDIKSDEYANPNVWLKMVVENDVEIKRILAKVRAIPISVKYDLVITLSSEVDVFKCSQVIMDTLWLYQYMNFEYNFMKIDAILIVPDTETIEIVREKTMSSENNITLKLSFEVHTYYPAIRKDRTDSNYIIIPKRSKWF
SLW08_110555	SLW08_1105552	F100371	MSNVTTFNADLPAHLRNVPIDDFTKAFAFSGGSTKRISLRGRVFRLVDGGKEIAKNTESFMDVVIVNGTKTVQKTWYAQEYNAE
SLW08_110590	SLW08_1105902	F007028	MPKISKSAQEHSSSGSPVDNVVSIIAGDISLTTAPILICGVNRKINIGNFENIDVYAAVAIPLPNASFEDREGLRLMIEDAAAYGFSAVSKETGDRYSLIKESQQGK*
SLW08_110992	SLW08_1109921	F000625	MPHTVRETIRLLVDSTMETLDVLLAASDRELPMPSSHVCAQGRDVWALITNDIDHEKIHSGQVIEGRYEARATASPMERLLAEWFEERARFIGSLIGMTDDQFNAATVEGGWTYRAVARHVLLIEQDSLKVLAEDQAARGED*
SLW08_111128	SLW08_1111281	F049700	MPTKLNIDTGGTFTGKKLLEKHQKNEYTHVSNYKEAVCLNCLKKDVAGATVAMICSDCAGVRGRETLLAVISTKFYGLCLFCAKYKFNLEEINARFCMPCHRKIANVCKDYNKK
SLW08_111405	SLW08_1114051	F004408	LSESINKLIEEAKKRKVSETTDLNFLKFLSKSQVDSFYALTNEEQESTKLHINESSYFTQKEVLSLISESLSTKNESLEERIIRLMPENVKPIWGQLNESSKKSILSQARLYPEDVLTTESQVDHFWSTRKLKTNESVTKKLVSHESLIQEDKLSDSEVQAIMERFKNI*
SLW08_111405	SLW08_1114052	F046392	MSHIRIDKQKAMKKWSPVLENMGVIGEDRLEWMSEYAEFHSINENAYANASNVSGM
SLW08_111457	SLW08_1114571	F076008	MNFFWQKTKGLKADIERHRAKEQELLTKINELEKPEHQGDPMSIAAIRTYRRFLYMLQQSKADVVSKLGK*
SLW08_112542	SLW08_1125421	F000264	TNSHMSAKLYKSEAFMRKRYTMDKKTPEEIANECGCTVETVYVHLAKMGLRKSKR*
SLW08_113623	SLW08_1136232	F056888	MNVSEVLDTGKTFEKSNPLKAGDKLTIQSFKVRYVEGLGAEIAEIGTTEGLRHSFGKTVVGQAKSQYWNDVVEKCVKKDATDGLDVYVVEREAEKTGRKMIALSMFEPRHTP*
SLW08_113856	SLW08_1138561	F051089	TLYNSVLYGRISTTLIAELNRLANGGAYPLPKNFKGLGGAVNAWAGTVGKGLLGALNYKANPARTPINYKGLGGVCNELAGTTDKSPIAALRSIAS*
SLW08_113955	SLW08_1139551	F105151	VQYCDDMLNVSIQDVLNDYDRIKKDLAKYNRDKNSELIQNLKEIQIGTLSEKQLDNATKFLKNVGEDELTAYLLYVLDNVPDVGGAKVKKFLLGFEDVLRTIKKINKPGAGKEKK*
SLW08_114000	SLW08_1140002	F023107	MDTISLTRTVQFVGDYFTLMTTVVLEEKLRLADEEDEDFAVRVASVFMKEYYGFDVEAVSNEIGVVDE*
SLW08_114115	SLW08_1141151	F043392	MEIVSKDYHHNGSGAPFVVAIVDDPADGDTKLVIMFDERDCTAVFSLDLLIEEEDISARGNGYDGSRYEKLRDDLWDGFSS*
SLW08_114415	SLW08_1144151	F008304	GTDKAIFGYGISGTLSNVSMTNLVSNTGVVSADVTGVGTARYGPAAVGYGGDKAIFGYGFIPGEASMTNLVSNTGIVSADVTGVGTARFYLAAAGYGGDKAIFGYGYVNTSLTNLVSNTGVVSADVTGVGTARHAPAAAGYGTDKAIFGYGYTTVVVSMTNLVSNTGVVSADVTGVGTARINIAAAAFGDKAIFGYGAIVSMTNLVSNAGVVSAD
SLW08_114419	SLW08_1144191	F016970	SWILLSENTIEKTLLESHVKDEESLRMLRTLETAMKYSYVTEDRVNFRISEYLTIGLSVSKKGGFYINDDEMNAETTLESLFSSPIIPIVNKSFYPLLVEVSKNMDKFVELDVVKRVSNLINPFLEVFAFNYKNNTFLYRCDERYGNSFFRYESCSEIINEVRNELNYDLTYFYENKLSKEVLVKRKLEDKEREITLKLEDVNFNISKVKSSIQM
SLW08_115636	SLW08_1156361	F014140	SMNTYTVKLNVSLEVVAFNEEDAKEYVSDIFSVDDEIKSVNIVKIQQK*