3300003538: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003538
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107629 | Ga0060332
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 210579501
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000711	Metagenome / Metatranscriptome	925	Y
F001156	Metagenome / Metatranscriptome	763	Y
F001334	Metagenome / Metatranscriptome	720	Y
F005464	Metagenome / Metatranscriptome	400	Y
F016978	Metagenome	243	Y
F026589	Metagenome / Metatranscriptome	197	Y
F031645	Metagenome	182	Y
F038276	Metagenome	166	N
F040139	Metagenome / Metatranscriptome	162	Y
F040684	Metagenome / Metatranscriptome	161	N
F047115	Metagenome / Metatranscriptome	150	Y
F050430	Metagenome / Metatranscriptome	145	N
F051448	Metagenome / Metatranscriptome	144	N
F061282	Metagenome / Metatranscriptome	132	N
F071317	Metagenome / Metatranscriptome	122	N
F076171	Metagenome	118	N
F085813	Metagenome	111	N
F089023	Metagenome	109	Y
F092694	Metagenome	107	N
F095628	Metagenome	105	Y
F101338	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
FS904DNA_1010955	Not Available	2591
FS904DNA_1035534	Not Available	678
FS904DNA_1041492	Not Available	889
FS904DNA_1066389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	525
FS904DNA_1073823	Not Available	778
FS904DNA_1110266	Not Available	852
FS904DNA_1115386	Not Available	595
FS904DNA_1117822	Not Available	699
FS904DNA_1120921	Not Available	909
FS904DNA_1131643	Not Available	697
FS904DNA_1132504	Not Available	718
FS904DNA_1144667	Not Available	1473
FS904DNA_1185587	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	584
FS904DNA_1201401	Not Available	1303
FS904DNA_1217568	Not Available	671
FS904DNA_1238804	Not Available	587
FS904DNA_1255532	All Organisms → cellular organisms → Bacteria	570
FS904DNA_1284286	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	744
FS904DNA_1285869	All Organisms → cellular organisms → Bacteria	870
FS904DNA_1346074	Not Available	600

Sequences

Scaffold ID	Protein ID	Family	Sequence
FS904DNA_1010955	FS904DNA_10109552	F050430	MDKKLKENIVVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSAKE*
FS904DNA_1035534	FS904DNA_10355341	F016978	IMNKGMEPFAKFKVGDKIRGRDALGIVDSQPGIVRGVHATYPTPEDYEDLTNPGIVYEVSFMKGTFLLKDYQMNLLGKQQLFNFMYDFSHIAKMREQQEFVEPLE*
FS904DNA_1041492	FS904DNA_10414921	F051448	MMFKPSIKNKLIDIDYEDKNVKIAHYYNKKDEHGYPMHNGLTYVYTFDAYEDKWLVHGVLEFEFESSAWWLYSDFYGTHSFNSYESIAKWWAENRFLPPREFVSKKDKERMEMDSLINSHICEMSEGMLSLSHTGV*
FS904DNA_1066389	FS904DNA_10663891	F076171	PGFGFFEKLAIAFPNLNLSWFLTGEGEMNLNRLDSTEKTILENYRKLPDEGKIGFEIRTNLYEREYLEHKELMGNIVEVAMNNESKLPFMSWELYNRLQVLQNLRVNKIISIQKESFEMALLSSSELKSQLENNEADILKLISLDAEYMKEFLT*
FS904DNA_1073823	FS904DNA_10738232	F038276	MNLDFLLRLTNYVNIDKQIYLAVIKQFLTVLVIINHACVLLHGNHNYKDVFYDRLSNQYIRNACDFHNLHISCNNLGLVLEKFLLDVKIINNKV*
FS904DNA_1110266	FS904DNA_11102661	F089023	VQPYATSNVSLGSTEESYDSDMTHSYRLIEGRLIRYRLSHGLV*
FS904DNA_1115386	FS904DNA_11153862	F047115	VKDPLEFRHQYQGIIRNLINNINICSRRWAETGDAGYGVAMKGYIKEVEELKTFIKKEEIRLGYYE*
FS904DNA_1117822	FS904DNA_11178222	F095628	MVYMYSIHLTFCIRNARAALVMKYGIEPFYDLQASSYAYKMRI*
FS904DNA_1120921	FS904DNA_11209211	F040684	MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGCCNTNS*
FS904DNA_1131643	FS904DNA_11316432	F031645	LKKFFLNVINKYRATIIEKKVCLQKRICHKLAPSKDFTIMPPKLKHSAPSKTKTVPGILFNSVNLSL*
FS904DNA_1132504	FS904DNA_11325042	F085813	MDQIEIIWILVTGNGALNYGLYAYQKGFRRLLKWDVIFLIILYTLMFVPLSLIVGLEFAN
FS904DNA_1144667	FS904DNA_11446673	F101338	LYFHSYIFSLSIAVLGLVARAPAVYMPFFKRIPCEGIISAVFLRLEIQVFVPYLTLLTLLTGVQ*
FS904DNA_1185587	FS904DNA_11855871	F001334	MKFKEYLQVNADDSIEQIMCGEWIQKSRSTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARTRIFPTT*
FS904DNA_1185587	FS904DNA_11855872	F061282	GGNIAVRGIPLLKKPPKGLVMKRFGGIDVFAIDPTHFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSSTGCMQYLKHGSGK*
FS904DNA_1201401	FS904DNA_12014012	F000711	MNTKIINNEPNHPTDYRLVKLMDGSILMGTISVDEQHMRIENPLELTTLPRMTEFGLKEDTTLSRWIPFTSDKEFVITKDKVVVISLATVELAHFYEVVLNKMQSDTRHARPPLTPEDIDRILSIAEEMDSEFMRDDEPHDMIGGYTIESKKLH*
FS904DNA_1217568	FS904DNA_12175682	F001156	MSKRKPKDYSKAILERIVGTKSKATLAEAFKLAFAEKYNVKREEMKKGIVDKVYNK*
FS904DNA_1238804	FS904DNA_12388041	F005464	MNIRDKDNVLRIVGWTLSLLCMIIGSYFVWPHIHVALLGIGFFYLGVRIFNFSTFKEYKEDRVKLLLKLNKW
FS904DNA_1255532	FS904DNA_12555323	F040139	TSEKEKSGTCCQIKDEQENAEQRTYEYHAKVGPAPKEPK*
FS904DNA_1284286	FS904DNA_12842861	F026589	MTISKEELLKRKEEIVTDYNKLVEEVSKGETSIKVMRTNLNALSGALQQVNLFIQQIEDDGDPMPEEKRQALEMATS*
FS904DNA_1285869	FS904DNA_12858692	F092694	MTFCEARVQVGFPDYLLVDMGIFELAAWFKAMRERLGDTQKVAEFEKIEVPGDLVIELVKVTKGRFHHRGVTERDIKLSADDAARLFKPDS
FS904DNA_1346074	FS904DNA_13460741	F071317	LKKITAVGLITLFTGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDIINQRFVTDLGIPKIETNYIACLGNFDPGPIASLNLPLLI*