3300003513: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS828_N3Area_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003513
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107594 | Ga0060294
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS828_N3Area_DNA
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60945433
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.944
  • Long. (^o): -129.985163
  • Alt. (m): N/A
  • Depth (m): 1524

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F016596	Metagenome / Metatranscriptome	246	Y
F019252	Metagenome / Metatranscriptome	231	Y
F024919	Metagenome	204	N
F025613	Metagenome	201	Y
F036294	Metagenome / Metatranscriptome	170	Y
F039110	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
FS828DNA_1002234	All Organisms → Viruses → Predicted Viral	1733
FS828DNA_1006934	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1167
FS828DNA_1015492	Not Available	559
FS828DNA_1020254	Not Available	755
FS828DNA_1038319	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	711
FS828DNA_1048689	Not Available	860
FS828DNA_1079267	All Organisms → cellular organisms → Bacteria	765

Sequences

Scaffold ID	Protein ID	Family	Sequence
FS828DNA_1002234	FS828DNA_10022342	F039110	MSKVAKKAVAKKATKHQLKALCDGSHGIDGGIYTFKSGDTVTLSKKGHYDSMKELACFSEV*
FS828DNA_1006934	FS828DNA_10069342	F036294	MDRGSSDEAIVGVKSVANEDAVTYPRVKLPASDREVGAEGWNM*
FS828DNA_1015492	FS828DNA_10154922	F019252	MKLIDKVKPEVLDALAESKIKWTASYNRIILSLESVDGYSELTINQLQTLICFLPDQFKPQGDIELFYGDNILQEKYIL*
FS828DNA_1020254	FS828DNA_10202542	F039110	MSKVAKKAVAKKATKLKLKALCDGSHGIDGGIYTFTEGDTITLSKKAHYDSMKELSCFSEV*
FS828DNA_1038319	FS828DNA_10383192	F016596	MTNKYSLVQIRESRNEFEALLRIYGVSNLKLCKILGVNYATSRKFIENPPSLRFIHAKTLADFIGLDIQDIVDTIVYDLN*
FS828DNA_1048689	FS828DNA_10486893	F025613	MNNYKITNKRSKRNYFLNEEETTNFFKKNKVQNYDITNLTEKQRIKRNKILDTIALVCFFAATILATILIIENNY*
FS828DNA_1077958	FS828DNA_10779581	F009300	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGIKSEGNALRVNFKAHNNPQKKITHYLFIQPLNALYARFCWFTHEQVSKWTVVMSTYTECYELEIPKNN*
FS828DNA_1079267	FS828DNA_10792672	F024919	IKKAMYFATEDVGEGKYQDFLDIMNSVYLYSNNFYDTMVEKKGGGGLLDEFMFLIPNMVFYTAIGYLTALKDGDNDYLMRSSLEEIGSICENATSELADILIDEKESKRLMQDILDLELTKN*