3300003358: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1

Overview

Basic Information

• IMG/M Taxon OID: 3300003358
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055716 | Ga0005090
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153090153
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094578	Metagenome / Metatranscriptome	106	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J50192_1000157	All Organisms → cellular organisms → Archaea	38465
C687J50192_1003866	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3768
C687J50192_1015826	Not Available	1292

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J50192_1000157	C687J50192_100015729	F094578	MINEKERPKWPMQRLKGMYFAMHCWKCKKFELPQEEFEQTEYEKSCEPNIQKIIHRLDLKEMRFKDFNIIIKNSVFCKFEKRDFSNNCPICKKFGVPNHF*
C687J50192_1000157	C687J50192_100015735	F094578	MEKAYKKERPKWPMQRLKGMYFAMHCWKCKKFELPEEEFEPTEYKLKCEKNIQRIIDILDVKEMKFKDFNNIIKNSEFCRFEKRDFSNNYPICKKFGITNHL*
C687J50192_1003866	C687J50192_10038661	F094578	MEKERPKGPLKRLKSMYFALHCWKCKKFELPMEEYKKLCEDNIQKIIDALEIKEMRFREFNNIIKNTNFCKFEKRDFSSCPICEKCGIPQKRFW*
C687J50192_1015826	C687J50192_10158263	F100657	MRQITISYTTSVFTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL*