3300003354: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS

Overview

Basic Information

• IMG/M Taxon OID: 3300003354
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053073 | Gp0061147 | Ga0007027
• Sample Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 265322457
• Sequencing Scaffolds: 2
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015908	Metagenome / Metatranscriptome	251	Y
F092682	Metagenome / Metatranscriptome	107	Y
F103371	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25160J50197_1073319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	650
JGI25160J50197_1101650	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25160J50197_1000294	JGI25160J50197_10002946	F103371	MSYDDWKTHNPDDDRCEFCGAAPWECRGGWQPNKCSGECGTGWRDPDHEYEKMRDEA*
JGI25160J50197_1001780	JGI25160J50197_10017803	F103371	MSYDDWKTHNPDDDRCEFCGAAPWECRGGWQPNNCTGECGKGWRDPDHEYEKMRDEA*
JGI25160J50197_1073319	JGI25160J50197_10733191	F015908	MRYMMIAAVLGMLASQAQAESKKYRSVLIPEKSVQACSGWGQTYTVDVSNGVLTLGVNYARRLFSAPVDSDGKIAASYKDPSGGILKFIALGNGEYELSNP
JGI25160J50197_1101650	JGI25160J50197_11016501	F092682	MHGRRQHXTAQKVRSSAAWRVCACIIDRSFVVIRLKHLAV*