3300003328: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-R (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003328
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061325 | Ga0006576
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-R (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81483407
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F022024	Metagenome / Metatranscriptome	216	Y
F034478	Metagenome / Metatranscriptome	174	Y
F037234	Metagenome / Metatranscriptome	168	Y
F039748	Metagenome / Metatranscriptome	163	Y
F049347	Metagenome / Metatranscriptome	146	Y
F100368	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006576J49610_1004010	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	896
Ga0006576J49610_1012180	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	2313
Ga0006576J49610_1025718	Not Available	1260
Ga0006576J49610_1026843	Not Available	721
Ga0006576J49610_1030408	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1186
Ga0006576J49610_1030472	Not Available	953

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006576J49610_1004010	Ga0006576J49610_10040101	F037234	TNYGKMNKYLELDPKASDLTMIRVIKARTGYRCIDIRRIVVSW*
Ga0006576J49610_1012180	Ga0006576J49610_10121801	F049347	QQLGTMKLDHYHVIHSSFAYSSIEECMLYYDRRQETTIVPEALEKYISGTHNLYLKQIPSCMTLRKAGGPVSRKVEPFLSEDGFLLPSLDNAGETVNDNLEHWFQDAVSDSMSQGDMEDIPGVLEEETRNIYEDPFRILAGYVYASQYCEDKPKINVWAGGCHRLQGKIRPDLVGSNRKNVTWFTKIHDHKEKMTLLFRHTHWGARLQAARHSVPGKDPMRNFSNTLFRRISFFLRGKPDPIWTKDEVSKFAEYSTDRNTTYRAQRLLEVLKTVDGLFLQRFLSYPEEVWTWEKFDLFVIQAISILLTDEFIDGELTSFSLENQVTHYEELKSSRKRFKQVIHLDEPVKGILDMDNAPRWVNSFLRPIWDRAVRHEGFSRLYLAGVLSQTRGSGTPPPLVVLRSKRKFLLSVSGPPPVISDTQRGLVTAAFDDIIGSIPDHIFTGLDTKARVTVTGSACWESTRKEGGTAQAILELMLKYDEMPIPIRDMDTGKVLKYSSKEGFESIGTAIFHACLDEVLHTKPEELREVLLTIVREPSKARVVTKGRAALKIVLDTVSKICSWPLKKGFKSSESGMGKSHHGWNLFKDFSSEEMFDLLFSEDRERRVEDTFNDHIDRVQYWQDLWFCSTDYQEATDRMVHAIARIISRRWMQKCGIPQILQGIVFEVCFKPRRVYFTATGPLKDIGHPSEGDTRYVTLYNGVLMGDPLTKVILHFTNIISRRLGEGMASGEIFKRFQNSSEAYEVFITSMMSDRTPIIPTGMMGL*
Ga0006576J49610_1025718	Ga0006576J49610_10257181	F100368	ECLMALLVGGKLRKATSGVDRSQAGCSSWGSDPVKEIGQTCGLNVIVRRASDLE*
Ga0006576J49610_1026843	Ga0006576J49610_10268431	F005470	IEMSVKLKKGGQVVCEFPKDMVPRSRLLTKLVDEFKAEEVDLEPAPGKDFSGPTVARVKEFLEKFEKGLPKNPKKPLLIFVTFNDWLDHNFDEKTREWLEDYLKPKSFYDLIELFNAAFYLQIDDLREIVAARIAHSIILERKAPEDFLRDFGIVTSYQEFFTPEEEKKFIDKEFINKNDFEGVAADDDEELLKEENK*
Ga0006576J49610_1030408	Ga0006576J49610_10304081	F039748	SDTLKLYVRGTVRDARRHARWMLARVARVYTQGETPQLHL*
Ga0006576J49610_1030472	Ga0006576J49610_10304721	F034478	EIDRPMDVEQGNLIQQDRPTIVRKVDLYGTYQEGKISFDHREEAEPVGNFLAGMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTVASANNKIGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGETKKFDFLKADGDNFPGYVVGFYGQHDENHITYLGVYVAPLTEINYYARRPYILTFKKMQQDKNLINQVAANLKVEREGERFKDANLEDTDGNSSKILLYFLDASLNHPELFKAVLEYL*
Ga0006576J49610_1038714	Ga0006576J49610_10387141	F022024	PNRGEPEAGYPAAYPFRRIVRAVPIGNDDSISPGTSPAPVGFNLGAPSACVLGATAAPDRYGVRNGSSNSTAILSGLLAAIWSRTPYARLTVDEFLAEVIEKRLHGSPRRSKPGGREPYLDGVPLADACTLADARRSALVCALENQ*