3300003311: Looe Key pool

Overview

Basic Information

• IMG/M Taxon OID: 3300003311
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110137 | Gp0072775 | Ga0057738
• Sample Name: Looe Key pool
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124960495
• Sequencing Scaffolds: 28
• Novel Protein Genes: 33
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	12
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. JA-3-3Ab	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Stylophora → Stylophora pistillata	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae → Pocillopora → Pocillopora damicornis	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cnidaria Microbial Communities From The Caribbean, With Black Band Disease
• Type: Host-Associated
• Taxonomy: Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Looe Key National Marine Sanctuary, Florida, USA
• Coordinates
  • Lat. (^o): 24.5484806
  • Long. (^o): -81.4059137
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000221	Metagenome / Metatranscriptome	1543	Y
F001105	Metagenome / Metatranscriptome	776	Y
F005693	Metagenome / Metatranscriptome	392	Y
F007159	Metagenome / Metatranscriptome	356	Y
F010974	Metagenome / Metatranscriptome	296	Y
F012646	Metagenome / Metatranscriptome	278	Y
F017438	Metagenome / Metatranscriptome	240	Y
F020846	Metagenome / Metatranscriptome	221	Y
F021048	Metagenome / Metatranscriptome	220	Y
F024251	Metagenome / Metatranscriptome	206	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LKpool_1006110	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2401
LKpool_1011212	Not Available	1424
LKpool_1014152	Not Available	1151
LKpool_1014983	Not Available	1089
LKpool_1017365	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata	963
LKpool_1018261	Not Available	921
LKpool_1018714	Not Available	901
LKpool_1018764	Not Available	899
LKpool_1020143	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa	852
LKpool_1021075	Not Available	821

Sequences

Scaffold ID	Protein ID	Family	Sequence
LKpool_1006110	LKpool_10061103	F046404	LEKIINEKMSKRRIQIIELQKLENPQKEEKRLLIRLHIF*
LKpool_1011212	LKpool_10112121	F100363	VTSTFTSITLTNIFHIAVHMFSKWSQMTSKCGKNKIVAHEAIAKCVTDVLTTF*
LKpool_1014152	LKpool_10141522	F053793	MEVPDNLRPTHNEKTFGAMKAERAVKRITFKSHEASPGETLYVSVPKLNENEVLVPGSLALLLDIDLSGGHADNLLVQNVTRALVDKLVVKFGGTTLQDT
LKpool_1014983	LKpool_10149832	F021048	MVVLTIVTEKNGKTIYFEDPIPKVHFMKLISCSLFNSWHTLKKEGSAALGDIQNPKGKSISKILPGHYNLESLAKEIDSLFAKYKYDLETETNTPLGQLVIKNTGKKTIELDRDLARLLGSGRNLGYITFVKGLTYPTTYFVHCDLIDKEQNLFNGKKSDVLARFDITGKPFEKVSYHGSPQQVLRDCSTDEFINSITISVKDENGELFDFNGFAMEFELELN*
LKpool_1017365	LKpool_10173651	F104455	MILEGIQSEDLCKIRSGAGDKKTSGVVAEEKLNEIFGKKYRISLDHQIITDHGVFYPQALFNDLTFELTLAEASQVVKGSDPDKLKYKLTNIQLEYEMIRSNTLADEAYSVYSGGKGFAYDHVQRSEVVPFKKETDTRINIKVNPQRLSLKAILLLFMEPYGKGARDSEKYIFPDLTKVSVTINGSPNMLYNEGIEGKDMWEEARRFFVKEKNKTEHMDLTKFYTGDKFGLVIDLRSMADQAMHGSGKRIVNSTDGVFLEIERKAEGSGNVNCHVFAISDSQFNIMGRQLESVQY*
LKpool_1018261	LKpool_10182612	F005693	MNFTVPFWKYKYSKLKLRVFLAGHSVVAVVTYIVTKMITCSPMIGQFFDTMIVASTDKEWL*
LKpool_1018714	LKpool_10187141	F005693	VPFLKYKYLKLKLRVFLAGHTAAMVTYCVTKKITKCSPMIGQFFDTMIVASTDQGW*
LKpool_1018764	LKpool_10187641	F021048	MVVLTLVSKKNGERIFFDEPLPKVHLAKVISCSLHNSWDTLKKEGSASLGDIQSTEGVSISNKLLPGHYDLERLAKEIDGLFVKRNYKLETEINTPVGQLVVKNFGGKNVELDRDLADLLGIHRKLKLITFVKKLSSPTTYFIHCDLIDKEKNLFNGKKSSLLAKFDVKGKAYEKVTYLSPPQEVYRECFSADEVSSITLSVKDQNGELFDFNGFEMDFVLDLN*
LKpool_1020143	LKpool_10201432	F001105	MADNKLVKTILDAAILTGLAAGIGWVAKKVLKENFTSDPSSNVTNYAKFTAVMAGSIALKDYIDDQGMIPKKF*
LKpool_1021075	LKpool_10210751	F010974	MKQPKNSIHLPNPTRNTRKIANKLRTVASAEINLQSKHDLICHVAKEKAATSAHSRAHVIPFFSVFIIPFESNASIKPKENIFYTQ*
LKpool_1021750	LKpool_10217501	F020846	MSVPENLHPTHNEKTFGAMKAKRMVNRATFKTSEASPGETLYVDVPKLNENEVLVPGSLALLFNIDLSGGHANNFLVQNVTRALVDKMVVKFGGAILEDTNGYDVYKTFEDLFLSQERRDGMILEGIQSEDLCKIRSGAGDKKTSGVAAENKLEEIFGKKYRIRLDHQILTDHGVFYPQALYNNLTFELTLAQASQVVKGSDPTKLKFKLTNIQLEYEMIRSKTLADEAH
LKpool_1022240	LKpool_10222401	F000221	MAIQMKAINIEQYFHVVLFIMLYKVVLTFKSVDETLVCGHSNERY*
LKpool_1022240	LKpool_10222402	F000221	MNAINIEQYFHVVLFIMLYKVVLTFKSVDKTLVCGHSNQSY*
LKpool_1022843	LKpool_10228431	F005693	LKLKLRVFLADHTVSMVTYYVRKMTTTCSPMIGQFFDTIIVASTDKEWL*
LKpool_1023652	LKpool_10236523	F000221	MKTIDKNFHEVLLITMYKVDLTFKSLDETLVCDHSNESH*
LKpool_1024953	LKpool_10249532	F024251	MAAAQSSNCQLSDAIQKFPPELHDIIYNLYVAIKLRQRAALGWDKVHEHISKLPFCHNMQRIVHMIICFEYENCRFEGCCFPCYESGTHHKVSLSPPMELIPLIENNIEYANFLKICSWDGYDWHEWYNFISKKFQPLSLQQGESIFLF*
LKpool_1028963	LKpool_10289631	F056319	MPPQIRAFYVFHVYFTVRRVLYQMGGIQSISALPGDPTFNQFNNHFDVASFKRLCNEFGVDPSSDFRFTHGANHGLGSVYVYAGGPTKTDFLYPGTNKFSDEGGKAIQGNLIYFIEPGSASEAQFDWFAPNTASGLTQAGLSRVNQSIEAFVYCVLGAQVNVRSSILGSGGRAKEAQSEFLVL
LKpool_1029068	LKpool_10290681	F056319	ISREIFDNGINLPPQIRAFYIFHVYFTVRRILYQLGGIQSISALPGDPTFNQFNNHYDVASYKRLCNEFGIDPSSDFRFTHGANHGLGSVYVYAGGATKTDFLYPGSNKFSDEGGKAIQGNLIYFIEPGAPSDTQSDWFAPNTASGLTQAGLSRINQSIEAFVYCILGSQVNVRSSILGSGGRAKEAQSEFLVLVEDAIRQPDLAESVQRYQLAVDE
LKpool_1029887	LKpool_10298871	F007159	VASWLVRSLPDRALAGDIVLCSWARHLTLTVPLSTQVYKWVPANLMLGGNLAMD*
LKpool_1030504	LKpool_10305041	F043217	VAIELRVVQFWSEIILVISNHIRAACSFEFEITRMISDQIALHSVQLALYSTYCNSA*
LKpool_1032607	LKpool_10326071	F000221	MTAIEQYLHVVLFIMLYKVVLTLKSVDETLVYMCNHSNKSY*
LKpool_1033863	LKpool_10338631	F001105	KLVKTLTDAATITGIAAGYGWVSKKVIKEPMTSDPSTNLMNYVKFTLIVAASLATKTYLEDQKILPS*
LKpool_1034276	LKpool_10342762	F061437	MQPLQNDLRSPAAKDNSITHTAKAGSNLDAATTMRSAETELQNTIELRATASEFVASKPDLDARAKKRRF*
LKpool_1034320	LKpool_10343201	F017438	YTGDRFGLVIDLRTMANQAMHGSGTRLVNSTEGVFLEIERKAEGSGNVNCHVFVISDSQLNIQDRQLESVQF*
LKpool_1036453	LKpool_10364531	F054574	LEVFLDGMLVHRRVTPSIKFPGTHLYTWVERGTVRKKCLDQ*
LKpool_1036853	LKpool_10368531	F001105	MSDNKLVKTILDAATLTGLVAVIGWLAKKVLKESFTSDPSSNVMNYAKFTAAMAGSIALKDYLDDQGMIPKKF*
LKpool_1038372	LKpool_10383721	F021048	KGKSISKIQPGHYDLESLAKAMESLFAQYKYDLKIKTNTPFGQLVIENFKGKQVEVDRDLARLFDSGRDLGVKTTVKLLTSPTTYFVHCDLIDKEQNLFNGKKSDLLARFDITGKPFEKVSYHSSQQQVLRDCSTDQFINSITLCVKDQNGELFDFKGFDMEFELELS*
LKpool_1040137	LKpool_10401371	F001105	MSDNKLVKTILDAAILTGLAAGIGWIAKKVLKENFTSDPSSNVMNYAKFTAVMAGSIALK
LKpool_1041187	LKpool_10411872	F100364	ISVWVLTQKLTSITASFRENVAAIVLFYTPSAKTMKAIFDDYAGDLTLDEYKGLISKMKARKFSYLVFLLRHPFGVSYFE*
LKpool_1043276	LKpool_10432761	F048764	LKAVCRHSNVFESFYFQIRKLFAGVLYEMSVPGNLLPTFSEMTFRAMKAERKVNRVTFKKTEAEPGDTLYVDVPKLNKNEVIVPGSLGLLFNIDLSGGHANNFLVQNVTRALVERMIVKFGGTILEDTHGYNVYKTFEDLFLSQEKREGMILEGIQSEDLCKIRSGAGDKKT
LKpool_1044654	LKpool_10446542	F025918	MEKVAGEQDLALQQHFTYKSSKFSENSNCSINLLFNSRGLKLSHFGIFDALFPFLAFFKL
LKpool_1044740	LKpool_10447401	F091323	MAKWWQAPGVAQKAVIAKAKAWSNFLKHFPKADKSRFIAEPHFDEKLNATAEVFFKESGGSLKSVFGSDRQYWSAEMKRALGLGDSGGFPYQLSPLGSKASLPIPAEPFDGKAPSLKKIFNTDIKIFVTPDRYFTTKFREIFQKTKLRH
LKpool_1134829	LKpool_11348291	F012646	MKLGVNNEVNPETKKAALKLMAGGPSKINPPNSHPSNPIHKAAMAESKKAASTVTQQAQPTAGKTEPEVSDKTPQHEINKTAVIIGVVGVVFLFMAWR*