3300003307: Hypersaline microbial mat communities from Elkhorn Slough, Monterey Bay, California, USA - CR8A/B (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003307
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0061252 | Ga0006883
• Sample Name: Hypersaline microbial mat communities from Elkhorn Slough, Monterey Bay, California, USA - CR8A/B (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107170253
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → unclassified Bacillariophycidae → Endosymbiont of Durinskia baltica	1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Entomophthoromycotina → Entomophthoromycetes → Entomophthorales → Ancylistaceae → Conidiobolus → Conidiobolus coronatus → Conidiobolus coronatus NRRL 28638	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.7999
  • Long. (^o): -121.7999
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F004248	Metagenome / Metatranscriptome	446	Y
F006424	Metagenome / Metatranscriptome	373	Y
F007073	Metagenome / Metatranscriptome	358	Y
F015563	Metagenome / Metatranscriptome	253	Y
F082762	Metagenome / Metatranscriptome	113	Y
F098745	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006883J46559_1017906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	15903
Ga0006883J46559_1022880	All Organisms → cellular organisms → Eukaryota	1340
Ga0006883J46559_1030446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	3730
Ga0006883J46559_1036156	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → unclassified Bacillariophycidae → Endosymbiont of Durinskia baltica	691
Ga0006883J46559_1042081	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	824
Ga0006883J46559_1056350	All Organisms → cellular organisms → Eukaryota	1170
Ga0006883J46559_1086141	Not Available	919
Ga0006883J46559_1122268	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Entomophthoromycotina → Entomophthoromycetes → Entomophthorales → Ancylistaceae → Conidiobolus → Conidiobolus coronatus → Conidiobolus coronatus NRRL 28638	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006883J46559_1017906	Ga0006883J46559_10179066	F001506	MNRILYEIRCKCKENISITKKRKSTSRTEGKRLVYPKSNELTSKSFQIEYEKKLSSVAKCLLNSFQHKYFYYAVDDILYLCKSNAKERENLLAILYSPVILLQNNLFINFFDIWIQEIYITEVLKSNKFLKTTDSNVESFHSITIKLLYRTKTPVKQQESLW*
Ga0006883J46559_1022880	Ga0006883J46559_10228801	F006424	MIGSGRVDTVFIRNDFPEFSSDLVTTLSSLNMYDFSHFQISG
Ga0006883J46559_1030446	Ga0006883J46559_10304466	F001506	MNRVFYQINCRCKKEISLTRKRKSNNRSEGRSFPYPNVDELTSKTFQLKYEKHLSSMAKFVLTSLQKKYFYYAIDDISYLLKSNPIERDNLLTILYSTVLSLHNNFSINFFDIWIHEIHITEVSNHNKFLTNKSQNCKPFYYITIKFLYRTKVPVKKQKSLW*
Ga0006883J46559_1036156	Ga0006883J46559_10361562	F098745	MKKLFAKDKEKRQSVKQKELKHFVLKQISTNANFIKTVRWNALYELNS
Ga0006883J46559_1042081	Ga0006883J46559_10420811	F015563	MSTTSLRTARSATSKVSNKAAFWGQWGANNPKHAETFLKQAYNRGYGQPLITGRYIEYDNTPTFLTFLARRWRYDWLKHIAMRVDAQRTPLVVLRRQIWMARFEYWARRWYARKAINRAAKVEWAFIKAKLEQPFTWTGHDLLHGLFWSMNMFAFFAIGEIFCRDRINGYGVATPEWTPAKPKFAPGFYHVYDPFESYPFDNQTNFITKQFQRTSWWNNSMETYWAPHRILA
Ga0006883J46559_1056350	Ga0006883J46559_10563501	F082762	MLGLFTESLTYLFPGGRTLKLIKNGVSVTNSSNPVVLAKNITLTVVDCCAPPPLRLAAHCIAAGATIAASIAAPNPVTLGSAVHLVTELYE
Ga0006883J46559_1086141	Ga0006883J46559_10861411	F007073	VAVVLLAFIAVALAIDAVGEGNSEAPDQVVNPPNWHGTWTANNRYGGVMYACPQGNRLYGVYSNAGFFIGRFEGRSVVGNWWEGGRGDRNDWQGSFEITISPDNQEFDGFYHRVTQDGTELRWHEHRLGAPYPSNPTPAQCLVPADEPVLGSFFRRPTGSATPAQYDLCKDEYDQIYGSYQSPQGYIEGWSVDSSTGFHGYRYDSNGESGAYILRSISDSEVRGFYWRGRLARQNIATSTEEILDRSSFVTTLDACQSVGPGFLRRLRGPQKGSAATLSISLFTIAAALLFVLF*
Ga0006883J46559_1122268	Ga0006883J46559_11222681	F004248	GTSDTYHEDKILNKYLSLDSEGKELVYKAAVQLAIIGYGSKNYGFVRKNEDEIVNLTDIFKKYGIKYLEKLNSKYNEDDLSVRRLLRLFRYQISRFIIENQRPSYLWLKYSNKNKNFIHICFPGGEHMVENKEEAEYLISTYSNLDVQLGTKFRDRLRRVFIARNI