Sample 3300003304

Basic Information
IMG/M Taxon OID	3300003304 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0054870 \| Ga0005273
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_B (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_B (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	68612363
Sequencing Scaffolds	20
Novel Protein Genes	32
Associated Families	25

Dataset Contents

Total Genome Size

68612363

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3
All Organisms → cellular organisms → Eukaryota → Sar	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → cellular organisms → Eukaryota → Sar

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.7299	Long. (^o)	-123.5699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

British Columbia, Canada

Coordinates

Lat. (^o)

48.7299

Long. (^o)

-123.5699

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F001145	Metagenome / Metatranscriptome	765	Y
F002923	Metatranscriptome	520	Y
F005848	Metagenome / Metatranscriptome	388	Y
F006551	Metagenome / Metatranscriptome	370	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012639	Metagenome / Metatranscriptome	279	Y
F016399	Metagenome / Metatranscriptome	247	Y
F020371	Metagenome / Metatranscriptome	224	Y
F049662	Metagenome / Metatranscriptome	146	Y
F053723	Metagenome / Metatranscriptome	140	Y
F061863	Metagenome / Metatranscriptome	131	Y
F063388	Metagenome / Metatranscriptome	129	Y
F066454	Metagenome / Metatranscriptome	126	N
F073414	Metagenome / Metatranscriptome	120	N
F077771	Metagenome / Metatranscriptome	117	N
F081198	Metagenome / Metatranscriptome	114	N
F090440	Metagenome / Metatranscriptome	108	N
F091007	Metagenome / Metatranscriptome	108	N
F092109	Metagenome / Metatranscriptome	107	N
F096688	Metagenome / Metatranscriptome	104	N
F098044	Metagenome / Metatranscriptome	104	Y
F100304	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005273J48911_1000092	Not Available	554	Open in IMG/M
Ga0005273J48911_1003446	Not Available	650	Open in IMG/M
Ga0005273J48911_1005215	Not Available	678	Open in IMG/M
Ga0005273J48911_1007656	Not Available	672	Open in IMG/M
Ga0005273J48911_1008529	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	942	Open in IMG/M
Ga0005273J48911_1009395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	829	Open in IMG/M
Ga0005273J48911_1009629	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	675	Open in IMG/M
Ga0005273J48911_1011657	Not Available	673	Open in IMG/M
Ga0005273J48911_1012228	Not Available	1025	Open in IMG/M
Ga0005273J48911_1015272	Not Available	1285	Open in IMG/M
Ga0005273J48911_1016743	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	644	Open in IMG/M
Ga0005273J48911_1020782	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	671	Open in IMG/M
Ga0005273J48911_1023305	Not Available	1142	Open in IMG/M
Ga0005273J48911_1024413	All Organisms → cellular organisms → Eukaryota → Sar	947	Open in IMG/M
Ga0005273J48911_1032771	Not Available	843	Open in IMG/M
Ga0005273J48911_1034727	Not Available	576	Open in IMG/M
Ga0005273J48911_1036689	Not Available	533	Open in IMG/M
Ga0005273J48911_1039134	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1077	Open in IMG/M
Ga0005273J48911_1046416	Not Available	606	Open in IMG/M
Ga0005273J48911_1062787	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	670	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005273J48911_1000092	Ga0005273J48911_10000921	F090440	NEISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0005273J48911_1003401	Ga0005273J48911_10034011	F092109	FKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTKSMCMNGQVVTTGYNSMDCSGAGMVIPMDSGATDQCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTKSMCM
Ga0005273J48911_1003446	Ga0005273J48911_10034461	F096688	VFYAIDRMSLGQIMRGKFMRIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGLELAGNRFRGGGGC*
Ga0005273J48911_1004153	Ga0005273J48911_10041531	F000155	MKFALAIATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005273J48911_1005215	Ga0005273J48911_10052151	F020371	FEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT*
Ga0005273J48911_1005319	Ga0005273J48911_10053191	F000155	NQMKFAAALIATVSASQFDNMNEDELLTSLSSTLSSALASEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005273J48911_1006679	Ga0005273J48911_10066791	F000075	IKHFFQMKFAVALIATVSASRLNADTQVEDDLLAQLSNTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0005273J48911_1007087	Ga0005273J48911_10070871	F100304	MKSVIAFGLVAAASGISLTPDNWDEAVAGKTVLVKFQAPW*
Ga0005273J48911_1007155	Ga0005273J48911_10071553	F091007	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETV
Ga0005273J48911_1007656	Ga0005273J48911_10076561	F061863	PLKIDTNLLIQTSIASCLVIFGVVTKNSSEQLGFPNHPIGKPLGMGMFIMGWIYIAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
Ga0005273J48911_1008529	Ga0005273J48911_10085293	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAAGAGSATVIAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSNIQFSV
Ga0005273J48911_1009395	Ga0005273J48911_10093952	F066454	MSIRFDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDDVTRSELINLWNELTDYYLPYEGDKEFTGSNDFFSL*
Ga0005273J48911_1009629	Ga0005273J48911_10096292	F005848	MALPVQRTYTAAIAALNAPVFMVDQQTLQNNFLTLTPNVLQDCVNLVDPAATQSLQYTLVKNGNATSVRAFSSAISATTSGRVPIGPVSMSSGSYQWQAVQTAGALFNGSILVRYGSPLN
Ga0005273J48911_1010320	Ga0005273J48911_10103201	F002923	MRCALFFFSLLLAAEAAQVTPVQKVIQLLQGMVEKGKKEKHAEQVQFAAYKQFCDDTTVEKTRAIKEANAMIEKLTADIQKYQADAAQLGKEIAQHDEDIATWNGDKKAASAVRSIENKDYVTLHKDYSESIDALERAIAVLKKQSHDRKQASMLLQKV
Ga0005273J48911_1010321	Ga0005273J48911_10103211	F000351	EKHAEQVQFAAYKQFCDDTTVEKTRAIKEANAMIEKLTADIQKYQADAAQLGKEIAQHDEDIATWNGDKKAASAVRSIENKDYVTLHKDYSESIDALERAIAVLKKQSHDRRQASMLLQKVNGASMIPEHAKRVISAFLASDPEVGTDVSAPEANAYEFQSSGIVEMLQKLLDKFSDERTTAEKEESNSKHAFEMMMQDLTAQVDQAT
Ga0005273J48911_1011657	Ga0005273J48911_10116571	F016399	SIRRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005273J48911_1012228	Ga0005273J48911_10122281	F098044	KQAVIGINSTYDTVLVIEGIILNNPMMSSLQDIAKLNKTNLCKMALMEFMTNPVSTRKLRRLFTAANDDDKFRSVMQGGQLE*
Ga0005273J48911_1015272	Ga0005273J48911_10152721	F081198	ETSKIEEKVKVTIETDGEVEVGKAEANTEVAPVVEAPAPATAAPETTSEKVAERIEKSNADTLKAVIETVSDAWKPKSEVAESTSDAGHVEEAFTDDQATEFMDKLFESGYNKLVLEKEGWIQTHTSQKQSGNGEVQEAVSTSGTIPGVKTASNISIQLGAKTAIPIRQYGQFQAVPVGQNTARFYRITVPDAGAITESPTTDITASTHTLTSIDVTCSIRGWRQTVEKAELEDYPASFLNAIRETARLESIRDEHKLILQDLASTARDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFEALISSTSLSEYTQIGNASVTRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYWDIVWTHRIGVNVIDAN
Ga0005273J48911_1015392	Ga0005273J48911_10153921	F000351	FAIAPAIRQVSPSIMKASLFFLALVACANAADVTPVQKVVQLLQGMVEKGKKEKHAEQVQFAAYKQFCDDTTVEKTRAIKEANAMIEKLTADIQKYQADAAQLGKEIAQHDEDIATWNGDKKAASAVRSIENKDYVTLHKDYSESIDALERAIAVLKKQSHDRKQASMLLQKVNGASMIPEHAKRVINAFLASDPEVGTDVSAPEANAYEFQSSGIVEMLQKLLDKFSDERTTAEKEESNSKHAFEMMM
Ga0005273J48911_1016743	Ga0005273J48911_10167431	F016399	KRYTRSARRGTKGIGSSLKTGMIGEVVKGIGAGTLASVVVSRVAPQYAPIASVGAGFLTGGIIGGAANLLLSGGLSSLGGMFGGASAPAQEFGV*
Ga0005273J48911_1016743	Ga0005273J48911_10167432	F005848	MALPVQRTYTGTVAALNAPVFMQDNQTLQNNFLTLTPNVLQDVVMNPDLAATQLYTFTLVKNGNATSVRAFSSAISPTTAGRVPIGPVSMSSGSYQWQVTQTAGVVASPTILARYASP
Ga0005273J48911_1020782	Ga0005273J48911_10207822	F005848	MVLPVQRTYTATIAALNAPVFMVDQQTLQNNFLTLTPNVLQDCVNLVDPAATQLLQYTLVKNGNATTVRAFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTAGVLFNGSILVRYGSPLN
Ga0005273J48911_1023305	Ga0005273J48911_10233051	F053723	VVWAYTGAVTQGDAESIYNAKGEVTAEDLLNTPINHIAFIANVDVNQSTGWWAPGANNTGGCGQEQTFELPFGYRGYNKSAEAASLPTFQGNLRKLHSNGVTITLTLGSWCTELPISTKDEWTDAQFGEFVTYFEDVRQNVFGGYLDGIDFDWEGYCSAGCLKGTCECDWDDKICGEASPSELAAGIFWETSPAPGEPKLKKQCWIMPTSSTFQVMTGITNAMKKKNYVVTLVPMSTSLYSGEPEVMASPVLRNEYGKYAKHTFAGEQVDLLELSDGILLQWYSGFDATLCHNSGDPMACACNNVPDADYPNVLDSDKDVGGLLMASWQTYWNISGNMFPSKYPVRCQACGANVTLSDGTYGPFPCYGDGEAWYLPSMNR
Ga0005273J48911_1024413	Ga0005273J48911_10244132	F001145	MDWNTLSFFINEEPLVQLNPNILETNVQNIVILLGILLYANNVSFSVSLEDRQKDIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQSWKILYEKDKVDLVNSKYQIVKTGLEQTFITTENLVKNFENKAFLSLQRYMIFITASRILRKFLFLSDTEQSKIIEITISKLGGAK*
Ga0005273J48911_1031016	Ga0005273J48911_10310161	F073414	KKSEADDKECPEGQSFDVSQGKCVAKESAFGDPKADSTIGDLAGEGADVGDKQQVEGCPEGHTINPDSGVCEPGASADKTDNIGQTNTSIATEKKLASIEKTLKALSEIKKPTAQVGLEDGVHSWKQVAENMAPSLRKFGKFEFDINLESLRSVNTKQTKDRSGQVTESFR
Ga0005273J48911_1032651	Ga0005273J48911_10326511	F063388	SNTRKDEMNAQHSFQMLKQGLEDETAVMKKQLSEATLSRSTAEEELHGAEAALTAEGKQLAADEKYLAELKQSCSAKAKEWDVRQKQAGEETAAIEKAKEILSDGVKVFLQTSTRMRTKDSEVAEEETRSRAVRVLEGLKKKFHSFRLVQLTARARSDPFSKIRGLVEDMIASLEKEAAEEA
Ga0005273J48911_1032771	Ga0005273J48911_10327711	F098044	STNEQAILGVNTTFDSMLAIEALILSNPMMNELKDIGKLTKTSLVKMALMEFISTPVSSRKLRRLFNAARDDDKFRAVMQGGQLE*
Ga0005273J48911_1034727	Ga0005273J48911_10347271	F006551	LDFESLDRIISSNAEEAVVGGGGSKHYNPWAASADINRDTNAMPEFDCTVESASGAIGTDGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRVANPYGESLVQIDVNGIQTFKGTGVGIHVDSIYGVPFIPTKDAPSYGNTEVGRLFALDTSDAEGYGYPRIGIQVAIPTEYYEATRRT
Ga0005273J48911_1036689	Ga0005273J48911_10366891	F009426	LKVKLKNENFSTAAKVNKNVKLLLNMTLGEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0005273J48911_1039134	Ga0005273J48911_10391342	F077771	MYYTYYFQGMVFEKEEIEKDPKKAFLSYSEKFKNIDYLNGFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDEGYGKKNYVSYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMINSDGVLKESMLTTNSAYDKEIKPGKNVEFLYPDVKGEIK*
Ga0005273J48911_1046416	Ga0005273J48911_10464162	F049662	MRSVIQDFSTEGENGDTHEPTGVFTLNEGQAKALGTAVLTTKKGLKGEELEGYLNDYWGKTWNHYDVNRSGSIPAGYAPMMVRFLANDNSL
Ga0005273J48911_1062787	Ga0005273J48911_10627871	F066454	DVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELVNLWNELTDYYLPYEGDKDFTEIVVFPP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003304: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_B (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences